Evidence map›Paper›PMID 19762289›Full record

ArticleJournal of chromatography. B, Analytical technologies in the biomedical and life sciences2010

Mass spectral characterization of organophosphate-labeled, tyrosine-containing peptides: characteristic mass fragments and a new binding motif for organophosphates.

Lawrence M Schopfer, Hasmik Grigoryan, Bin Li, Florian Nachon, Patrick Masson, Oksana Lockridge

Abstract read
In one paragraph

Article in Journal of chromatography. B, Analytical technologies in the biomedical and life sciences, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
7.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 56 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Protein tyrosine adduct in humans self-poisoned by chlorpyrifos.Toxicology and applied pharmacology · 2013
    Article
  8. Polyclonal antibody to soman-tyrosine.Chemical research in toxicology · 2013
    Article
  9. Article
  10. Review
  11. Article
  12. Detection of adduct on tyrosine 411 of albumin in humans poisoned by dichlorvos.Toxicological sciences : an official journal of the Society of Toxicology · 2010
    Article
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 3 countries.

Lawrence M SchopferEppley Institute, University of Nebraska Medical Center, Omaha, NE 68198-6805, USA. lmschopf@unmc.edu
Hasmik Grigoryan
Bin Li
Florian Nachon
Patrick Masson
Oksana Lockridge
University of Nebraska Medical Center · USService de Santé des Armées · FR

Funding

UNMC/EPPLEY CANCER CENTER SUPPORT GRANTP30CA036727 · NCI · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI Apar Kishor Ganti · 1985 to 2026
$55.0M
Mass Spectrometry in Clinical Diagnosis of Nerve Agent ExposureU01NS058056 · NINDS · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI LOCKRIDGE, OKSANA · 2006 to 2008
$1.4M
NCI NIH HHS P30 CA036727NCI NIH HHS P30CA36727NINDS NIH HHS U01 NS058056
6 · The paper itself

Abstract

We have identified organophosphorus agent (OP)-tyrosine adducts on 12 different proteins labeled with six different OP. Labeling was achieved by treating pure proteins with up to 40-fold molar excess of OP at pH 8-8.6. OP-treated proteins were digested with trypsin, and peptides were separated by HPLC. Fragmentation patterns for 100 OP-peptides labeled on tyrosine were determined in the mass spectrometer. The goals of the present work were (1) to determine the common features of the OP-reactive tyrosines, and (2) to describe non-sequence MSMS fragments characteristic of OP-tyrosine peptides. Characteristic ions at 272 and 244 amu for tyrosine-OP immonium ions were nearly always present in the MSMS spectrum of peptides labeled on tyrosine by chlorpyrifos-oxon. Characteristic fragments also appeared from the parent ions that had been labeled with diisopropylfluorophosphate (216 amu), sarin (214 amu), soman (214 amu) or FP-biotin (227, 312, 329, 691 and 708 amu). In contrast to OP-reactive serines, which lie in the consensus sequence GXSXG, the OP-reactive tyrosines have no consensus sequence. Their common feature is the presence of nearby positively charged residues that activate the phenolic hydroxyl group. The significance of these findings is the recognition of a new binding motif for OP to proteins that have no active site serine. Modified peptides are difficult to find when the OP bears no radiolabel and no tag. The characteristic MSMS fragment ions are valuable because they are identifiers for OP-tyrosine, independent of the peptide.

Indexed as

Amino Acid MotifsAnimalsBinding SitesBiotinCattleHumansOrganophosphatesPeptide FragmentsProteinsTandem Mass SpectrometryTrypsinTyrosineBiotinOrganophosphatesPeptide FragmentsProteinsTrypsinTyrosine

Identifiers

PMID19762289
PMCPMC2860652
OpenAlexW1981097572

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.