Evidence map›Paper›PMID 19760663›Full record

ArticleProtein science : a publication of the Protein Society2009

One-plasmid tunable coexpression for mycobacterial protein-protein interaction studies.

Yong Chang, David Mead, Vinay Dhodda, Phil Brumm, Brian G Fox

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.3field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Yong ChangBiophysics Graduate Degree Program, University of Wisconsin-Madison, 433 Babcock Drive, Madison, Wisconsin 53706-1549, USA.
David Mead
Vinay Dhodda
Phil Brumm
Brian G Fox
Lucigen Corporation · USUniversity of Wisconsin–Madison · US

Funding

Specialized Center for Eukaryotic Structural GenomicsU54GM074901 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI MARKLEY, JOHN LUTE · 2005 to 2009
$18.9M
ROLE OF IRON-OXO CLUSTERS IN FATTY ACID DESATURATIONR01GM050853 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI FOX, BRIAN G. · 1995 to 2007
$1.9M
NIGMS NIH HHS 1U54 GM074901NIGMS NIH HHS R01 GM-50853
6 · The paper itself

Abstract

A single plasmid that allows controlled coexpression has been developed for use in mycobacteria. The tetracycline inducible promoter, PtetO, was used to provide tetracycline-dependent induction of one gene, while the Psmyc, Pimyc, or Phsp promoters were used to provide three different levels of constitutive expression of a second gene. The functions of these four individual promoters were established using green fluorescent protein (GFP) and a newly identified red fluorescence inducible protein from Geobacillus sterothermophilus strain G1.13 (RFIP) as reporters. The tandem use of GFP and RFIP as reporter genes allowed optimization of the tunable coexpression in Mycobacterium smegmatis; either time at a fixed inducer concentration or changes in inducer concentration could be used to control the protein:protein ratio. This single vector system was used to coexpress the two-protein Mycobacterium tuberculosis stearoyl-CoA Delta(9) desaturase complex (integral membrane desaturase Rv3229c and NADPH oxidoreductase Rv3230c) in M. smegmatis. The catalytic activity was found to increase in a manner corresponding to increasing the level of Rv3230c relative to a fixed level of Rv3229c. This system, which can yield finely tuned coexpression of the fatty acid desaturase complex in mycobacteria, may be useful for study of other multicomponent complexes. Furthermore, the tunable coexpression strategy used herein should also be applicable in other species with minor modifications.

Indexed as

Bacterial ProteinsCell CountCloning, MolecularGenes, ReporterGeobacillus stearothermophilusGreen Fluorescent ProteinsLuminescent ProteinsModels, GeneticMycobacterium smegmatisMycobacterium tuberculosisPlasmidsPromoter Regions, GeneticProtein Interaction MappingRed Fluorescent ProteinStearoyl-CoA DesaturaseTetracyclineBacterial ProteinsGreen Fluorescent ProteinsLuminescent ProteinsRed Fluorescent ProteinStearoyl-CoA DesaturaseTetracycline

Identifiers

PMID19760663
PMCPMC2788286
OpenAlexW2088436656

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.