Evidence map›Paper›PMID 19759347›Full record

ArticlePlant physiology2009

Stable transcription activities dependent on an orientation of Tam3 transposon insertions into Antirrhinum and yeast promoters occur only within chromatin.

Takako Uchiyama, Kaien Fujino, Takashi Ogawa, Akihito Wakatsuki, Yuji Kishima, Tetsuo Mikami, Yoshio Sano

Abstract read
In one paragraph

Article in Plant physiology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

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3citing papers in PubMed
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3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

7 authors.

Takako UchiyamaLaboratories of Plant Breeding, Research Faculty of Agriculture, Hokkaido University, Sapporo 060-8589, Japan.
Kaien Fujino
Takashi Ogawa
Akihito Wakatsuki
Yuji Kishima
Tetsuo Mikami
Yoshio Sano

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Transposon insertions occasionally occur in the promoter regions of plant genes, many of which are still capable of being transcribed. However, it remains unclear how transcription of such promoters is able to occur. Insertion of the Tam3 transposon into various genes of Antirrhinum majus can confer leaky phenotypes without its excision. These genes, named Tam3-permissible alleles, often contain Tam3 in their promoter regions. Two alleles at different anthocyanin biosynthesis loci, nivea(recurrensTam3) (niv(rec)) and pallida(recurrensTam3) (pal(rec)), both contain Tam3 at a similar position immediately upstream of the promoter TATA-box; however, these insertions had different phenotypic consequences. Under conditions where the inserted Tam3 is immobilized, the niv(rec) line produces pale red petals, whereas the pal(rec) line produces no pigment. These pigmentation patterns are correlated with the level of transcripts from the niv(rec) or pal(rec) alleles, and these transcriptional activities are independent of DNA methylation in their promoter regions. In niv(rec), Tam3 is inserted in an orientation that results in the 3' end of Tam3 adjacent to the 5' region of the gene coding sequence. In contrast, the pal(rec) allele contains a Tam3 insertion in the opposite orientation. Four of five different nonrelated genes that are also Tam3-permissible alleles and contain Tam3 within the promoter region share the same Tam3 orientation as niv(rec). The different transcriptional activities dependent on Tam3 orientation in the Antirrhinum promoters were consistent with expression of luciferase reporter constructs introduced into yeast chromosomes but not with transient expression of these constructs in Antirrhinum cells. These results suggest that for Tam3 to sustain stable transcriptional activity in various promoters it must be embedded in chromatin.

Indexed as

DNA Transposable ElementsMutagenesis, InsertionalPromoter Regions, GeneticAllelesAntirrhinumChromatinDNA MethylationDNA, PlantGene Expression Regulation, PlantMolecular Sequence DataPichiaChromatinDNA, PlantDNA Transposable Elements

Identifiers

PMID19759347
PMCPMC2773084

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.