Evidence map›Paper›PMID 19758990›Full record

ArticleThe Journal of biological chemistry2009

Probing the catalytic sites and activation mechanism of photoreceptor phosphodiesterase using radiolabeled phosphodiesterase inhibitors.

Yu-Ting Liu, Suzanne L Matte, Jackie D Corbin, Sharron H Francis, Rick H Cote

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Yu-Ting LiuDepartment of Molecular, Cellular and Biomedical Sciences, University of New Hampshire, Durham, New Hampshire 03824, USA.
Suzanne L Matte
Jackie D Corbin
Sharron H Francis
Rick H Cote
University of New Hampshire · USVanderbilt University · US

Funding

ROLE OF CYCLIC GMP IN ROD PHOTORECEPTOR FUNCTIONR01EY005798 · NEI · UNIVERSITY OF WISCONSIN MADISON · PI COTE, RICK H · 1986 to 2018
$5.8M
REGULATION OF CGMP DEPENDENT PROTEIN KINASER01DK040029 · NIDDK · VANDERBILT UNIVERSITY · PI CORBIN, JACKIE DAVID · 1989 to 2007
$2.9M
NEI NIH HHS EY-05798NEI NIH HHS R01 EY005798NIDDK NIH HHS DK-40029NIDDK NIH HHS R01 DK040029
6 · The paper itself

Abstract

Retinal photoreceptor phosphodiesterase (PDE6) is unique among the phosphodiesterase enzyme family not only for its catalytic heterodimer but also for its regulatory gamma-subunits (Pgamma) whose inhibitory action is released upon binding to the G-protein transducin. It is generally assumed that during visual excitation both catalytic sites are relieved of Pgamma inhibition upon binding of two activated transducin molecules. Because PDE6 shares structural and pharmacological similarities with PDE5, we utilized radiolabeled PDE5 inhibitors to probe the catalytic sites of PDE6. The membrane filtration assay we used to quantify [(3)H]vardenafil binding to PDE6 required histone II-AS to stabilize drug binding to the active site. Under these conditions, [(3)H]vardenafil binds stoichiometrically to both the alpha- and beta-subunits of the activated PDE6 heterodimer. [(3)H]vardenafil fails to bind to either the PDE6 holoenzyme or the PDE6 catalytic dimer reconstituted with Pgamma, consistent with Pgamma blocking access to the drug-binding sites. Following transducin activation of membrane-associated PDE6 holoenzyme, [(3)H]vardenafil binding increases in proportion to the extent of PDE6 activation. Both [(3)H]vardenafil binding and hydrolytic activity of transducin-activated PDE6 fail to exceed 50% of the value for the PDE6 catalytic dimer. However, adding a 1000-fold excess of activated transducin can stimulate the hydrolytic activity of PDE6 to its maximum extent. These results demonstrate that both subunits of the PDE6 heterodimer are able to bind ligands to the enzyme active site. Furthermore, transducin relieves Pgamma inhibition of PDE6 in a biphasic manner, with only one-half of the maximum PDE6 activity efficiently attained during visual excitation.

Indexed as

AnimalsBinding SitesCatalysisCatalytic DomainCattleCyclic Nucleotide Phosphodiesterases, Type 6DimerizationGuanosine 5'-O-(3-Thiotriphosphate)HistonesHoloenzymesImidazolesModels, MolecularPhosphodiesterase InhibitorsPhotoreceptor Cells, VertebratePiperazinesProtein ConformationCyclic Nucleotide Phosphodiesterases, Type 6Guanosine 5'-O-(3-Thiotriphosphate)HistonesHoloenzymesImidazolesPhosphodiesterase InhibitorsPiperazinesProtein SubunitsReactive Oxygen SpeciesSulfonesTransducinTriazinesVardenafil Dihydrochloride

Identifiers

PMID19758990
PMCPMC2797223
OpenAlexW2052328968

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.