ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2009
Development and evaluation of single-nucleotide polymorphism markers in allotetraploid rapeseed (Brassica napus L.).
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.
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Who cites it
13 citing papers in PubMed.
- Comparison of statistical models for nested association mapping in rapeseed (Brassica napus L.) through computer simulations.BMC plant biology · 2016Article
- Allelic Variation of BnaC.TT2.a and Its Association with Seed Coat Color and Fatty Acids in Rapeseed (Brassica napus L.).PloS one · 2016Article
- Article
- A high-throughput SNP array in the amphidiploid species Brassica napus shows diversity in resistance genes.Functional & integrative genomics · 2014Article
- Review
- Screening of a Brassica napus bacterial artificial chromosome library using highly parallel single nucleotide polymorphism assays.BMC genomics · 2013Article
- Identification of mitochondrial DNA sequence variation and development of single nucleotide polymorphic markers for CMS-D8 in cotton.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2013Article
- Article
- High-throughput polymorphism detection and genotyping in Brassica napus using next-generation RAD sequencing.BMC genomics · 2012Article
- Article
- A candidate gene-based association study of tocopherol content and composition in rapeseed (Brassica napus).Frontiers in plant science · 2012Article
- Article
- Mapping of quantitative trait loci and development of allele-specific markers for seed weight in Brassica napus.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2010Article
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Authors and funding
3 authors.
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Abstract
Single-nucleotide polymorphisms (SNPs) and insertion-deletions (INDELs) are currently the important classes of genetic markers for major crop species. In this study, methods for developing SNP markers in rapeseed (Brassica napus L.) and their in silico mapping and use for genotyping are demonstrated. For the development of SNP and INDEL markers, 181 fragments from 121 different gene sequences spanning 86 kb were examined. A combination of different selection methods (genome-specific amplification, hetero-duplex analysis and sequence analysis) allowed the detection of 18 singular fragments that showed a total of 87 SNPs and 6 INDELs between 6 different rapeseed varieties. The average frequency of sequence polymorphism was estimated to be one SNP every 247 bp and one INDEL every 3,583 bp. Most SNPs and INDELs were found in non-coding regions. Polymorphism information content values for SNP markers ranged between 0.02 and 0.50 in a set of 86 varieties. Using comparative genetics data for B. napus and Arabidopsis thaliana, an allocation of SNP markers to linkage groups in rapeseed was achieved: a unique location was determined for seven gene sequences; two and three possible locations were found for six and four sequences, respectively. The results demonstrate the usefulness of existing genomic resources for SNP discovery in rapeseed.
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