Evidence map›Paper›PMID 19755116›Full record

ArticleBiochemical and biophysical research communications2009

Fluorescence probing of T box antiterminator RNA: insights into riboswitch discernment of the tRNA discriminator base.

John A Means, Crystal M Simson, Shu Zhou, Aaron A Rachford, Jeffrey J Rack, Jennifer V Hines

Abstract read
In one paragraph

Article in Biochemical and biophysical research communications, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.8field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Structure and mechanism of the T-box riboswitches.Wiley interdisciplinary reviews. RNA
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

John A MeansDepartment of Chemistry and Biochemistry, Ohio University, Athens, OH 45701, USA.
Crystal M Simson
Shu Zhou
Aaron A Rachford
Jeffrey J Rack
Jennifer V Hines
Ohio University · US

Funding

Structure Function Studies of a RNA Antiterminator BulgeR01GM061048 · NIGMS · OHIO UNIVERSITY ATHENS · PI HINES, JENNIFER V · 2001 to 2005
$1.1M
NIGMS NIH HHS R01 GM061048NIGMS NIH HHS R01-GM61048
6 · The paper itself

Abstract

The T box transcription antitermination riboswitch is one of the main regulatory mechanisms utilized by Gram-positive bacteria to regulate genes that are involved in amino acid metabolism. The details of the antitermination event, including the role that Mg(2+) plays, in this riboswitch have not been completely elucidated. In these studies, details of the antitermination event were investigated utilizing 2-aminopurine to monitor structural changes of a model antiterminator RNA when it was bound to model tRNA. Based on the results of these fluorescence studies, the model tRNA binds the model antiterminator RNA via an induced-fit. This binding is enhanced by the presence of Mg(2+), facilitating the complete base pairing of the model tRNA acceptor end with the complementary bases in the model antiterminator bulge.

Indexed as

5' Untranslated RegionsGene Expression Regulation, BacterialTerminator Regions, GeneticFluorescenceGram-Positive BacteriaMagnesiumNucleic Acid ConformationRibosomesRNA, BacterialRNA, TransferSpectrometry, Fluorescence5' Untranslated RegionsMagnesiumRNA, BacterialRNA, Transfer

Identifiers

PMID19755116
PMCPMC2789444
OpenAlexW2167465044

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.