Evidence map›Paper›PMID 19751767›Full record

ArticleJournal of virological methods2010

Application of proteomics methods for pathogen discovery.

Yiming Ye, Eng-Chun Mar, Suxiang Tong, Scott Sammons, Sunan Fang, Larry J Anderson, Dongxia Wang

Open access · greenAbstract readEvaluation Study
In one paragraph

Article in Journal of virological methods, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
4.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 25 citations in OpenAlex.

  1. Review
  2. Article
  3. Viral categorization and discovery in human circulation by transcriptome sequencing.Biochemical and biophysical research communications · 2013
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Emerging advances in rapid diagnostics of respiratory infections.Infectious disease clinics of North America · 2010
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Yiming YeBiotechnology Core Facility Branch, Division of Scientific Resources, NCPDCID, Atlanta, GA, USA.
Eng-Chun Mar
Suxiang Tong
Scott Sammons
Sunan Fang
Larry J Anderson
Dongxia Wang
Centers for Disease Control and Prevention · USNational Center for Immunization and Respiratory Diseases · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Proteomics have been used widely to study proteins in complex materials such as cells, body fluids, tissues, and organisms. Application of advance proteomic techniques for the characterization of disease-specific proteins may provide information for the detection of potential infectious agents. In this report, two proteomics techniques, a two-dimensional differential gel electrophoresis (2D-DIGE) and a one-dimensional gel electrophoresis and one-dimensional liquid chromatography coupled with mass spectrometry (GeLC-MS/MS), were applied for investigating viral proteins from cultured cells inoculated with a clinical sample. The 2D-DIGE method identified five viral proteins of vaccinia virus that are only present in infected cells, these results are in agreement with findings determined by genome based methods. The GeLC-MS/MS method identified eight vaccinia virus proteins out of 428 proteins detected in the sample. These results demonstrate that proteomic techniques can be used effectively for the detection of infectious agents. Given that the methods are capable of applying to proteins without a prior knowledge of the pathogen present, proteomics has a potential of being developed as a molecular tool for pathogen discovery, and disease diagnosis of emerging infectious diseases and for bioterrorism defense.

Indexed as

BioterrorismAmino Acid SequenceCell LineChromatography, LiquidElectrophoresis, Gel, Two-DimensionalElectrophoresis, Polyacrylamide GelFibroblastsHumansMass SpectrometryMolecular Sequence DataProteomeProteomicsSequence AlignmentVaccinia virusViral ProteinsVirus DiseasesProteomeViral Proteins

Identifiers

PMID19751767
PMCPMC7119679
OpenAlexW1983891422

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.