Evidence map›Paper›PMID 19749764›Full record

ArticleNature immunology2009

Transcription elongation factor ELL2 directs immunoglobulin secretion in plasma cells by stimulating altered RNA processing.

Kathleen Martincic, Serkan A Alkan, Alys Cheatle, Lisa Borghesi, Christine Milcarek

Open access · greenAbstract read
In one paragraph

Article in Nature immunology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 91 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
91citing papers in PubMed, 2 pooled it
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

91 citing papers in PubMed, 2 syntheses or guidelines pooled it, 129 citations in OpenAlex.

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31 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Kathleen MartincicUniversity of Pittsburgh, School of Medicine, Department of Immunology, Pittsburgh, Pennsylvania, USA.
Serkan A Alkan
Alys Cheatle
Lisa Borghesi
Christine Milcarek
University of Pittsburgh · US

Funding

University of Pittsburgh Clinical and Translational Science InstituteUL1TR000005 · NCATS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI REIS, STEVEN E · 2012 to 2015
$50.8M
Polyadenylation Factors in B-Cells, Lymphoma &MyelomaR01CA086433 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI MILCAREK, CHRISTINE A. · 2000 to 2007
$1.9M
The role of E47 in uncommitted hematopoietic progenitorsR01AI079047 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI BORGHESI, LISA · 2009 to 2013
$1.6M
Cellular and molecular mechanisms of HSC dysfunction in chronic inflammationR56AI079047 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI BORGHESI, LISA · 2015 to 2015
$378k
NCATS NIH HHS UL1 TR000005NCI NIH HHS CA86433NCI NIH HHS R01 CA086433NIAID NIH HHS AI079047NIAID NIH HHS R01 AI079047NIAID NIH HHS R56 AI079047
6 · The paper itself

Abstract

Immunoglobulin secretion is modulated by competition between the use of a weak promoter-proximal poly(A) site and a nonconsensus splice site in the final secretory-specific exon of the heavy chain pre-mRNA. The RNA polymerase II transcription elongation factor ELL2, which is induced in plasma cells, enhanced both polyadenylation and exon skipping with the gene encoding the immunoglobulin heavy-chain complex (Igh) and reporter constructs. Lowering ELL2 expression by transfection of heterogenous ribonucleoprotein F (hnRNP F) or small interfering RNA resulted in lower abundance of secretory-specific forms of immunoglobulin heavy-chain mRNA. ELL2 and the polyadenylation factor CstF-64 tracked together with RNA polymerase II across the Igh mu- and gamma-gene segments; the association of both factors was blocked by ELL2-specific small interfering RNA. Thus, loading of ELL2 and CstF-64 on RNA polymerase II was linked, caused enhanced use of the proximal poly(A) site and was necessary for processing of immunoglobulin heavy-chain mRNA.

Indexed as

AnimalsCleavage Stimulation FactorImmunoglobulin Heavy ChainsMiceOligonucleotide Array Sequence AnalysisPlasma CellsReverse Transcriptase Polymerase Chain ReactionRNA PrecursorsRNA Processing, Post-TranscriptionalTranscriptional Elongation FactorsTransfectionCleavage Stimulation FactorCstf2t protein, mouseImmunoglobulin Heavy ChainsRNA PrecursorsTranscriptional Elongation Factors

Identifiers

PMID19749764
PMCPMC2771556
OpenAlexW2170755007

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.