Evidence map›Paper›PMID 19746166›Full record

ArticlePloS one2009

The 3' region of the chicken hypersensitive site-4 insulator has properties similar to its core and is required for full insulator activity.

Paritha I Arumugam, Fabrizia Urbinati, Chinavenmeni S Velu, Tomoyasu Higashimoto, H Leighton Grimes, Punam Malik

Abstract read
In one paragraph

Article in PloS one, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed.

  1. Trial
  2. Lentiviral-Mediated Systemic RNA Interference In Vivo.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  3. Article
  4. Article
  5. Long-Term Safety and Efficacy of Gene-Pulmonary Macrophage Transplantation Therapy of PAP in Csf2raMolecular therapy : the journal of the American Society of Gene Therapy · 2019
    Article
  6. Gene Therapy For Beta-Thalassemia: Updated Perspectives.The application of clinical genetics · 2019
    Article
  7. Article
  8. Article
  9. Article
  10. Gene Addition Strategies for β-Thalassemia and Sickle Cell Anemia.Advances in experimental medicine and biology · 2017
    Review
  11. Article
  12. Article
  13. Insulated Foamy Viral Vectors.Human gene therapy · 2016
    Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Gene therapy for hemoglobinopathies: the state of the field and the future.Hematology/oncology clinics of North America · 2014
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Paritha I ArumugamDivision of Experimental Hematology and Cancer Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio, USA.
Fabrizia Urbinati
Chinavenmeni S Velu
Tomoyasu Higashimoto
H Leighton Grimes
Punam Malik

Funding

Transduction of Human Stem and Progenitor CellsP01HL073104 · NHLBI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI KOHN, DONALD B · 2003 to 2013
$18.3M
ROLE OF ENDOTHELIN-1 INSICKLEACUTE CHEST SYNDROMEU54HL070595 · NHLBI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI FISHER, TIMOTHY C · 2003 to 2007
$8.3M
Molecular Mechanism of Severe Congenital NeutropeniaR01HL079574 · NHLBI · UNIVERSITY OF LOUISVILLE · PI GRIMES, H. LEIGHTON · 2004 to 2009
$2.4M
Lentiviral vectors for gene therapy for beta-thalassemiaR01HL070135 · NHLBI · CINCINNATI CHILDRENS HOSP MED CTR · PI MALIK, PUNAM · 2002 to 2006
$1.5M
A preclinical large animal model for globin gene transferZ01HL006008 · NHLBI · NATIONAL HEART, LUNG, AND BLOOD INSTITUTE · PI TISDALE, JOHN · 2008 to 2008
$330k
Intramural NIH HHS Z01 HL006008NHLBI NIH HHS HL079574NHLBI NIH HHS P01 HL073104NHLBI NIH HHS P01-HL073104NHLBI NIH HHS R01 HL070135NHLBI NIH HHS R01 HL079574NHLBI NIH HHS R01-HL70135-01NHLBI NIH HHS U54-HL06-008NHLBI NIH HHS U54 HL070595NHLBI NIH HHS U54-HL070595
6 · The paper itself

Abstract

Chromatin insulators separate active transcriptional domains and block the spread of heterochromatin in the genome. Studies on the chicken hypersensitive site-4 (cHS4) element, a prototypic insulator, have identified CTCF and USF-1/2 motifs in the proximal 250 bp of cHS4, termed the "core", which provide enhancer blocking activity and reduce position effects. However, the core alone does not insulate viral vectors effectively. The full-length cHS4 has excellent insulating properties, but its large size severely compromises vector titers. We performed a structure-function analysis of cHS4 flanking lentivirus-vectors and analyzed transgene expression in the clonal progeny of hematopoietic stem cells and epigenetic changes in cHS4 and the transgene promoter. We found that the core only reduced the clonal variegation in expression. Unique insulator activity resided in the distal 400 bp cHS4 sequences, which when combined with the core, restored full insulator activity and open chromatin marks over the transgene promoter and the insulator. These data consolidate the known insulating activity of the canonical 5' core with a novel 3' 400 bp element with properties similar to the core. Together, they have excellent insulating properties and viral titers. Our data have important implications in understanding the molecular basis of insulator function and design of gene therapy vectors.

Indexed as

Insulator Elements3' Untranslated RegionsAmino Acid MotifsAnimalsCell LineChickensEpigenesis, GeneticGenetic VectorsHematopoietic Stem CellsLentivirusMicePromoter Regions, GeneticStructure-Activity RelationshipTransgenes3' Untranslated Regions

Identifiers

PMID19746166
PMCPMC2736623

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.