Evidence map›Paper›PMID 19745841›Full record

ArticleEMBO reports2009

Role of Varp, a Rab21 exchange factor and TI-VAMP/VAMP7 partner, in neurite growth.

Andrea Burgo, Emmanuel Sotirakis, Marie-Christine Simmler, Agathe Verraes, Christophe Chamot, Jeremy C Simpson, Letizia Lanzetti, Véronique Proux-Gillardeaux, Thierry Galli

Open access · bronzeAbstract read
In one paragraph

Article in EMBO reports, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 89 citations in OpenAlex.

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  7. Membrane Fusion and SNAREs: Interaction with Ras Proteins.International journal of molecular sciences · 2022
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  11. Novel loss-of-function variant in DENND5A impedes melanosomal cargo transport and predisposes to familial cutaneous melanoma.Genetics in medicine : official journal of the American College of Medical Genetics · 2022
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  13. Targeting Endosomal Recycling Pathways by Bacterial and Viral Pathogens.Frontiers in cell and developmental biology · 2021
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 4 countries.

Andrea BurgoMembrane Traffic in Neuronal & Epithelial Morphogenesis, INSERM U950, University Denis Diderot/Paris 7, France.
Emmanuel Sotirakis
Marie-Christine Simmler
Agathe Verraes
Christophe Chamot
Jeremy C Simpson
Letizia Lanzetti
Véronique Proux-Gillardeaux
Thierry Galli
Institut Jacques Monod · FRMorpho (United States) · USCentre National de la Recherche Scientifique · FRUniversité Paris Cité · FRUniversity College Dublin · IEUniversity of Turin · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The vesicular soluble N-ethylmaleimide-sensitive factor attachment protein receptor (SNARE) tetanus neurotoxin-insensitive vesicle-associated membrane protein (TI-VAMP/VAMP7) was previously shown to mediate an exocytic pathway involved in neurite growth, but its regulation is still largely unknown. Here we show that TI-VAMP interacts with the Vps9 domain and ankyrin-repeat-containing protein (Varp), a guanine nucleotide exchange factor (GEF) of the small GTPase Rab21, through a specific domain herein called the interacting domain (ID). Varp, TI-VAMP and Rab21 co-localize in the perinuclear region of differentiating hippocampal neurons and transiently in transport vesicles in the shaft of neurites. Silencing the expression of Varp by RNA interference or expressing ID or a form of Varp deprived of its Vps9 domain impairs neurite growth. Furthermore, the mutant form of Rab21, defective in GTP hydrolysis, enhances neurite growth. We conclude that Varp is a positive regulator of neurite growth through both its GEF activity and its interaction with TI-VAMP.

Indexed as

AnimalsAnkyrin RepeatCell LineGuanine Nucleotide Exchange FactorsHumansMiceNeuritesProtein BindingProtein Interaction Domains and Motifsrab GTP-Binding ProteinsRatsR-SNARE ProteinsANKRD27 protein, humanGuanine Nucleotide Exchange FactorsRAB21 protein, humanrab GTP-Binding ProteinsR-SNARE ProteinsVAMP7 protein, humanVamp7 protein, ratVarp protein, ratVPS9-ankyrin-repeat protein, mouse

Identifiers

PMID19745841
PMCPMC2759737
OpenAlexW2114051740

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.