Evidence map›Paper›PMID 19744999›Full record

ArticleMolecular biology and evolution2010

Analysis of the immunoglobulin light chain genes in zebra finch: evolutionary implications.

Sabyasachi Das, Uzra Mohamedy, Masayuki Hirano, Masatoshi Nei, Nikolas Nikolaidis

Abstract read
In one paragraph

Article in Molecular biology and evolution, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Evolution of variable lymphocyte receptor B antibody loci in jawless vertebrates.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  2. Article
  3. Review
  4. Article
  5. Characterization of Lamprey BAFF-like Gene: Evolutionary Implications.Journal of immunology (Baltimore, Md. : 1950) · 2016
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Evolution of B cell immunity.Annual review of animal biosciences · 2013
    Review
  11. Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Sabyasachi DasDepartment of Pathology and Laboratory Medicine, Emory Vaccine Center, School of Medicine, Emory University, USA. sdas8@emory.edu
Uzra Mohamedy
Masayuki Hirano
Masatoshi Nei
Nikolas Nikolaidis

Funding

THEORETICAL POPULATION GENETICS AND ITS APPLICATIONSR01GM020293 · NIGMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI NEI, MASATOSHI · 1985 to 2009
$1.8M
NIGMS NIH HHS GM020293-35NIGMS NIH HHS R01 GM020293
6 · The paper itself

Abstract

All jawed vertebrates produce immunoglobulins (IGs) as a defense mechanism against pathogens. Typically, IGs are composed of two identical heavy chains (IGH) and two identical light chains (IGL). Most tetrapod species encode more than one isotype of light chains. Chicken is the only representative of birds for which genomic information is currently available and is an exception to the above rule because it encodes only a single IGL isotype (i.e., lambda). Here, we show that the genome of zebra finch, another bird species, encodes a single IGL isotype, that is, lambda, like the chicken. These results strongly suggest that the second isotype (i.e., kappa) present in both reptiles and mammals was lost in a very early stage of bird evolution. Furthermore, we show that both chicken and zebra finch contain a single set of functional variable, joining, and constant region genes and multiple variable region pseudogenes. The latter finding suggests that this type of genomic organization was already present in the common ancestor of these bird species and remained unchanged over a long evolutionary time. This conservation is in contrast with the high levels of variation observed in the mammalian IGL loci. The presence of a single functional variable region gene followed by multiple variable pseudogenes in zebra finch suggest that this species may be generating antibody diversity by a gene conversion-like mechanism like the chicken.

Indexed as

Evolution, MolecularAmino Acid SequenceAnimalsAntibody DiversityChickensFinchesGene ConversionGenes, Immunoglobulin Light ChainGenetic MarkersMammalsModels, GeneticModels, MolecularMolecular Sequence DataSequence AlignmentGenetic Markers

Identifiers

PMID19744999
PMCPMC2877555

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.