Evidence map›Paper›PMID 19744989›Full record

ArticleMicrobiology (Reading, England)2009

Genetic diversity and stability of the porA allele as a genetic marker in human Campylobacter infection.

A J Cody, M J C Maiden, K E Dingle

Open access · greenAbstract read
In one paragraph

Article in Microbiology (Reading, England), 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 35 citations in OpenAlex.

  1. Carbapenem resistant Campylobacter jejuni bacteremia in a Bruton's X-linked agammaglobulinemia patient.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2024
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  5. The Distribution ofGenes · 2021
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  7. Investigating Major RecurringFrontiers in cellular and infection microbiology · 2020
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  9. Genetic Diversity ofJournal of veterinary research · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

A J CodyThe Tinbergen Building, Department of Zoology, University of Oxford, South Parks Road, OX1 3PS, UK.
M J C MaidenThe Tinbergen Building, Department of Zoology, University of Oxford, South Parks Road, OX1 3PS, UK.
K E DingleNational Institute for Health Research, Oxford Biomedical Research Centre Programme, John Radcliffe Hospital, Oxford OX3 9DU, UK.
University of Oxford · GB

Funding

Wellcome Trust 087622
6 · The paper itself

Abstract

The major outer-membrane protein (MOMP) of Campylobacter jejuni and Campylobacter coli, encoded by the porA gene, is extremely genetically diverse. Conformational MOMP epitopes are important in host immunity, and variation in surface-exposed regions probably occurs as a result of positive immune selection during infection. porA diversity has been exploited in genotyping studies using highly discriminatory nucleotide sequences to identify potentially epidemiologically linked cases of human campylobacteriosis. To understand the overall nature and extent of porA diversity and stability in C. jejuni and C. coli we investigated sequences in isolates (n=584) obtained from a defined human population (approx. 600,000) over a defined time period (1 year). A total of 196 distinct porA variants were identified. Regions encoding putative extracellular loops were the most variable in both nucleotide sequence and length. Phylogenetic analysis identified three porA allele clusters that originated in (i) predominantly C. jejuni and a few C. coli, (ii) solely C. jejuni or (iii) predominantly C. coli and a few C. jejuni. The stability of porA within an individual human host was investigated using isolates cultured longitudinally from 64 sporadic cases, 27 of which had prolonged infection lasting between 5 and 98 days (the remainder having illness of normal duration, 0-4 days), and 20 cases from family outbreaks. Evidence of mutation was detected in two patients with prolonged illness. Despite demonstrable positive immune selection in these two unusual cases, the persistence of numerous variants within the population indicated that the porA allele is a valuable tool for use in extended typing schemes.

Indexed as

Genes, BacterialAllelesAmino Acid SequenceAntigens, BacterialBacterial ProteinsBacterial Typing TechniquesCampylobacter coliCampylobacter InfectionsCampylobacter jejuniGenetic MarkersGenetic VariationGenomic InstabilityHumansLongitudinal StudiesMolecular EpidemiologyMolecular Sequence DataAntigens, BacterialBacterial ProteinsGenetic Markersmajor outer membrane protein, Campylobacter jejuniPorins

Identifiers

PMID19744989
PMCPMC2885669
OpenAlexW2010079049

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.