Evidence map›Paper›PMID 19742309›Full record

ArticlePloS one2009

The non-canonical CTD of RNAP-II is essential for productive RNA synthesis in Trypanosoma brucei.

Anish Das, Vivian Bellofatto

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.1field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 33 citations in OpenAlex.

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  18. Trypanosomatid protein phosphatases.Molecular and biochemical parasitology · 2010
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Anish DasDepartment of Microbiology and Molecular Genetics, University of Medicine and Dentistry-New Jersey Medical School, Newark, New Jersey, United States of America. A.Das-dasak@umdnj.edu
Vivian Bellofatto
Rutgers, The State University of New Jersey · US

Funding

TRYPANOSOME MRNA SYNTHESIS BY GENE TRANSFERR01AI029478 · NIAID · UNIV OF MED/DENT OF NJ-NJ MEDICAL SCHOOL · PI BELLOFATTO, VIVIAN · 1991 to 2010
$4.6M
NIAID NIH HHS AI29478NIAID NIH HHS AI535835NIAID NIH HHS R01 AI029478
6 · The paper itself

Abstract

The carboxy-terminal domain (CTD) of the largest subunit (RPB1) of RNA polymerase II (RNAP-II) is essential for gene expression in metazoa and yeast. The canonical CTD is characterized by heptapeptide repeats. Differential phosphorylation of canonical CTD orchestrates transcriptional and co-transcriptional maturation of mRNA and snRNA. Many organisms, including trypanosomes, lack a canonical CTD. In these organisms, the CTD is called a non-canonical CTD or pseudo-CTD (PsiCTD. In the African trypanosome, Trypanosoma brucei, the PsiCTD is approximately 285 amino acids long, rich in serines and prolines, and phosphorylated. We report that T. brucei RNAP-II lacking the entire PsiCTD or containing only a 95-amino-acid-long PsiCTD failed to support cell viability. In contrast, RNAP-II with a 186-amino-acid-long PsiCTD maintained cellular growth. RNAP-II with PsiCTD truncations resulted in abortive initiation of transcription. These data establish that non-canonical CTDs play an important role in gene expression.

Indexed as

Gene Expression RegulationAmino Acid MotifsAmino Acid SequenceAnimalsCell SurvivalGene Expression ProfilingModels, BiologicalMolecular Sequence DataPhosphorylationProtein Structure, TertiaryRNARNA Polymerase IISequence Homology, Amino AcidSerineTrypanosoma brucei bruceiRNARNA Polymerase IISerine

Identifiers

PMID19742309
PMCPMC2734056
OpenAlexW1974032249

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.