Evidence map›Paper›PMID 19742122›Full record

ArticleInternational journal of molecular sciences2009

Protein and metabolite analysis reveals permanent induction of stress defense and cell regeneration processes in a tobacco cell suspension culture.

Rico Lippmann, Stephanie Kaspar, Twan Rutten, Michael Melzer, Jochen Kumlehn, Andrea Matros, Hans-Peter Mock

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 31 citations in OpenAlex.

  1. Review
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  4. Genome-based establishment of a high-yielding heterotic pattern for hybrid wheat breeding.Proceedings of the National Academy of Sciences of the United States of America · 2015
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Rico LippmannInstitute of Plant Genetics and Crop Plant Research (IPK), Corrensstraße 3, D-06 466, Gatersleben, Germany.
Stephanie KasparInstitute of Plant Genetics and Crop Plant Research (IPK), Corrensstraße 3, D-06 466, Gatersleben, Germany.
Twan RuttenInstitute of Plant Genetics and Crop Plant Research (IPK), Corrensstraße 3, D-06 466, Gatersleben, Germany.
Michael MelzerInstitute of Plant Genetics and Crop Plant Research (IPK), Corrensstraße 3, D-06 466, Gatersleben, Germany.
Jochen KumlehnInstitute of Plant Genetics and Crop Plant Research (IPK), Corrensstraße 3, D-06 466, Gatersleben, Germany.ORCID 0000-0001-7080-7983
Andrea MatrosInstitute of Plant Genetics and Crop Plant Research (IPK), Corrensstraße 3, D-06 466, Gatersleben, Germany.
Hans-Peter MockInstitute of Plant Genetics and Crop Plant Research (IPK), Corrensstraße 3, D-06 466, Gatersleben, Germany.
Leibniz-Institut für Pflanzengenetik und Kulturpflanzenforschung (IPK) · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The secretome of a tobacco cell suspension culture was investigated by a combined proteomic and metabolomic approach. Protein analysis from 2-DE gels led to identification of 32 out of 60 spots from culture medium. Identified proteins were mainly involved in stress defence and cell regeneration processes. Among them three putative new isoforms, e.g. for chitinase, peroxidase and beta-1,4-xylosidase were identified, not yet present in available protein databases for the genus Nicotiana. GC-MS analysis of time course experiments revealed significant changes for metabolites involved in energy transport, signalling and cell development. Among them, the most significant increase was found for putrescine in the medium of cultures entering the exponential phase. Results showed strong abundance of stress associated proteins and metabolites in the absence of elicitors or additional stress treatments.

Indexed as

MetabolomeAmino Acid SequenceCell Growth ProcessesCell LineChitinasesGene Expression Regulation, PlantIsoenzymesMolecular Sequence DataNicotianaPeroxidasesPlant ProteinsProteomePutrescineSignal TransductionStress, PhysiologicalXylosidasesChitinasesexo-1,4-beta-D-xylosidaseIsoenzymesPeroxidasesPlant ProteinsProteomePutrescineXylosidasesapoplastextracellular proteinssecreted putrescinesuspension culturetobacco

Identifiers

PMID19742122
PMCPMC2738909
OpenAlexW2022243394

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.