Evidence map›Paper›PMID 19741715›Full record

ArticleGenes and immunity2010

Genetic association of htSNPs across the major histocompatibility complex with rheumatoid arthritis in an African-American population.

R J Reynolds, J M Kelley, L B Hughes, N Yi, S L Bridges, CLEAR Investigators

Open access · bronzeAbstract read
In one paragraph

Article in Genes and immunity, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.2field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

R J ReynoldsSection on Statistical Genetics, Department of Biostatistics, University of Alabama at Birmingham (UAB), Birmingham, AL 35294-2182, USA.
J M Kelley
L B Hughes
N Yi
S L Bridges
CLEAR Investigators
University of Alabama at Birmingham · USUniversity of Alabama at Birmingham Hospital · US

Funding

Zonisamide in Patients with Neuropathic Pain Associated with Diabetic NeuropathyM01RR000046 · NCRR · UNIV OF NORTH CAROLINA CHAPEL HILL · PI JOY, MELANIE S · 1985 to 2008
$38.5M
Why is the prevalence of obesity so high in U.S. Southern States? Regional predictors of BMI and obesity treatment response.P30DK056336 · NIDDK · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI James O Hill · 2000 to 2026
$31.9M
Zevalin Radioimmunotherapy Using a Modified TreatmentM01RR000032 · NCRR · UNIVERSITY OF SOUTHERN CALIFORNIA · PI RICH, ROBERT R. · 1985 to 2008
$23.6M
UAB CENTER FOR CLINICAL AND TRANSLATIONAL SCIENCE (CCTS) UL1: BPCAUL1RR025777 · NCRR · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI GUAY-WOODFORD, LISA MARIE · 2008 to 2011
$22.3M
Program Project in the Genetics of SLEP01AR049084 · NIAMS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI KIMBERLY, ROBERT P. · 2002 to 2012
$12.7M
Sex Related Determinants Of Pain In FibromyalgiaP60AR048095 · NIAMS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI ARNETT, DONNA K · 2002 to 2012
$11.7M
UAB Statistical Genetics Post-Doctoral Training ProgramT32HL072757 · NHLBI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI TIWARI, HEMANT K. · 2003 to 2016
$3.8M
RA-Related Autoantibodies in Healthy FDR of RA PatientsR01AR051394 · NIAMS · UNIVERSITY OF COLORADO DENVER · PI NORRIS, JILL M · 2005 to 2011
$3.0M
Bayesian Methods for Mapping Complex Epistatic GenesR01GM069430 · NIGMS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI YI, NENGJUN · 2005 to 2013
$2.3M
CLEAR-264002247N01AR002247 · NIAMS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · 2000 to 2004
$805k
STRUCTURE/FUNCTION STUDY OF HUMAN AUTOIMMUNE ANTIGENSR15AR040894 · NIAMS · CARLETON COLLEGE · PI TYMOCZKO, JOHN L · 1991 to 1991
–
POPULATION GENETICS ANALYSIS PROGRAM IMMUNITY TO VACCINES/INFECTION-266040068N01AI040068 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI KASLOW, RICHARD ALAN · 2006 to 2006
–
NCRR NIH HHS M01 RR000032NCRR NIH HHS M01 RR 000046NCRR NIH HHS M01 RR000046NCRR NIH HHS M01 RR00032NCRR NIH HHS U54 RR025777NCRR NIH HHS UL1 RR025777NHLBI NIH HHS T32 HL072757NIAID NIH HHS N01 AI040068NIAMS NIH HHS N01 AR002247NIAMS NIH HHS N01 AR02247NIAMS NIH HHS P01 AR40894NIAMS NIH HHS P60 AR048095NIAMS NIH HHS R01 AR051394NIAMS NIH HHS R01 AR51394NIDDK NIH HHS P30 DK056336NIGMS NIH HHS R01 GM069430
6 · The paper itself

Abstract

Notwithstanding the well-established association of HLA-DRB1 shared epitope alleles, interest remains in identifying additional major histocompatibility complex (MHC) region variants associated with rheumatoid arthritis (RA). We used a panel of 1201 haplotype-tagging single nucleotide polymorphisms (SNPs) designed for African Americans to find genetic variants associated with RA in a 3.8-Mb region encompassing the MHC. Conditioning on seven covariates, including HLA-DRB1 risk alleles and population structure, we identified an SNP in HLA-DOA (rs9276977) significantly associated with RA; minor allele frequency (MAF) 0.27 in cases versus 0.21 in controls, odds ratio (+/-95% confidence interval)=2.86 (1.61, 5.31). Genotyping of rs9276977 in an independent sample of African-American RA patients and controls did not replicate the association (MAF 0.28 in cases versus 0.27 in controls). This study points to the potential association of a SNP in the HLA-DOA gene with RA in African Americans, but also underscores the importance of replication of findings in larger patient cohorts.

Indexed as

Polymorphism, Single NucleotideAllelesArthritis, RheumatoidBlack or African AmericanCohort StudiesFemaleGene FrequencyHLA-D AntigensHLA-DR AntigensHLA-DRB1 ChainsHumansMaleHLA-D AntigensHLA-DO antigensHLA-DR AntigensHLA-DRB1 Chains

Identifiers

PMID19741715
PMCPMC2809137
OpenAlexW2031739418

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.