Evidence map›Paper›PMID 19737748›Full record

ArticleGenetics2009

Two distinct roles for EGL-9 in the regulation of HIF-1-mediated gene expression in Caenorhabditis elegans.

Zhiyong Shao, Yi Zhang, Jo Anne Powell-Coffman

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
2.0field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 70 citations in OpenAlex.

  1. Forward genetics ineLife · 2025
    Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Assessing the PThe Science of the total environment · 2022
    Article
  10. Oxygen-sensing mechanisms in development and tissue repair.Development (Cambridge, England) · 2021
    Review
  11. Article
  12. Article
  13. Article
  14. HIF-1 Has a Central Role inFrontiers in genetics · 2020
    Article
  15. Article
  16. Article
  17. Reconstructing a metazoan genetic pathway with transcriptome-wide epistasis measurements.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Zhiyong ShaoDepartment of Genetics, Development, and Cell Biology, Iowa State University, Ames, Iowa 50011-3260, USA.
Yi Zhang
Jo Anne Powell-Coffman
Iowa State University · US

Funding

Regulatory circuits that control transcriptional responses to hypoxiaR01GM078424 · NIGMS · IOWA STATE UNIVERSITY · PI POWELL-COFFMAN, JO ANNE · 2007 to 2010
$990k
NIGMS NIH HHS GM078424NIGMS NIH HHS R01 GM078424
6 · The paper itself

Abstract

Oxygen is critically important to metazoan life, and the EGL-9/PHD enzymes are key regulators of hypoxia (low oxygen) response. When oxygen levels are high, the EGL-9/PHD proteins hydroxylate hypoxia-inducible factor (HIF) transcription factors. Once hydroxylated, HIFalpha subunits bind to von Hippel-Lindau (VHL) E3 ligases and are degraded. Prior genetic analyses in Caenorhabditis elegans had shown that EGL-9 also acted through a vhl-1-independent pathway to inhibit HIF-1 transcriptional activity. Here, we characterize this novel EGL-9 function. We employ an array of complementary methods to inhibit EGL-9 hydroxylase activity in vivo. These include hypoxia, hydroxylase inhibitors, mutation of the proline in HIF-1 that is normally modified by EGL-9, and mutation of the EGL-9 catalytic core. Remarkably, we find that each of these treatments or mutations eliminates oxygen-dependent degradation of HIF-1 protein, but none of them abolishes EGL-9-mediated repression of HIF-1 transcriptional activity. Further, analyses of new egl-9 alleles reveal that the evolutionarily conserved EGL-9 MYND zinc finger domain does not have a major role in HIF-1 regulation. We conclude that C. elegans EGL-9 is a bifunctional protein. In addition to its well-established role as the oxygen sensor that regulates HIF-1 protein levels, EGL-9 inhibits HIF-1 transcriptional activity via a pathway that has little or no requirement for hydroxylase activity or for the EGL-9 MYND domain.

Indexed as

Gene Expression RegulationAnimalsBinding SitesCaenorhabditis elegansCaenorhabditis elegans ProteinsCatalysisChelating AgentsGreen Fluorescent ProteinsHydroxylationHypoxia-Inducible Factor 1, alpha SubunitImmunoblottingModels, BiologicalMutationOxygenReverse Transcriptase Polymerase Chain ReactionSignal TransductionCaenorhabditis elegans ProteinsChelating AgentsEgl-9 protein, C elegansGreen Fluorescent ProteinsHypoxia-Inducible Factor 1, alpha SubunitOxygen

Identifiers

PMID19737748
PMCPMC2778979
OpenAlexW2152002370

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.