Evidence map›Paper›PMID 19735279›Full record

ArticleEnvironmental microbiology2010

Identification and characterization of new LuxR/LuxI-type quorum sensing systems from metagenomic libraries.

Youai Hao, Stephen C Winans, Bernard R Glick, Trevor C Charles

Abstract read
In one paragraph

Article in Environmental microbiology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.6field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 69 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Youai HaoDepartment of Biology, University of Waterloo, Waterloo, ON, Canada.
Stephen C Winans
Bernard R Glick
Trevor C Charles
University of Waterloo · CACornell University · US

Funding

INTERACTIONS BETWEEN AGROBACTERIUM AND HOST PLANTSR01GM042893 · NIGMS · CORNELL UNIVERSITY ITHACA · PI WINANS, STEPHEN C. · 1994 to 2010
$4.1M
NIGMS NIH HHS R01 GM042893
6 · The paper itself

Abstract

Quorum sensing (QS) cell-cell communication systems are utilized by bacteria to coordinate their behaviour according to cell density. Several different types of QS signal molecules have been identified, among which acyl-homoserine lactones (AHLs) produced by Proteobacteria have been studied to the greatest extent. Although QS has been studied extensively in cultured microorganisms, little is known about the QS systems of uncultured microorganisms and the roles of these systems in microbial communities. To extend our knowledge of QS systems and to better understand the signalling that takes place in the natural environment, metagenomic libraries constructed using DNA from activated sludge and soil were screened, using an Agrobacterium biosensor strain, for novel QS synthase genes. Three cosmids (QS6-1, QS10-1 and QS10-2) that encode the production of QS signals were identified and DNA sequence analysis revealed that all three clones encode a novel luxI family AHL synthase and a luxR family transcriptional regulator. Thin layer chromatography revealed that these LuxI homologue proteins are able to synthesize multiple AHL signals. Tandem mass spectrometry analysis revealed that LuxI(QS6-1) directs the synthesis of at least three AHLs, 3-O-C14:1 HSL, 3-O-C16:1 HSL and 3-O-C14 HSL; LuxI(QS10-1) directs the synthesis of at least 3-O-C12 HSL and 3-O-C14 HSL; while LuxI(QS10-2) directs the synthesis of at least C8 HSL and C10 HSL. Two possible new AHLs, C14:3 HSL and (?)-hydroxymethyl-3-O-C14 HSL, were also found to be synthesized by LuxI(QS6-1).

Indexed as

MetagenomicsSoil MicrobiologyBacteriaBacterial ProteinsBase SequenceDNA, BacterialGene Expression Regulation, BacterialGenes, BacterialGenome, BacterialGenomic LibraryMolecular Sequence DataQuorum SensingRepressor ProteinsSequence Analysis, DNATrans-ActivatorsTranscription FactorsBacterial ProteinsDNA, BacterialLuxI protein, BacteriaLuxR autoinducer binding proteinsRepressor ProteinsTrans-ActivatorsTranscription Factors

Identifiers

PMID19735279
PMCPMC2905786
OpenAlexW2041724627

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.