Evidence map›Paper›PMID 19732344›Full record

ArticleMolecular microbiology2009

N- and C-terminal regions of the quorum-sensing activator TraR cooperate in interactions with the alpha and sigma-70 components of RNA polymerase.

Yinping Qin, Carrie Keenan, Stephen K Farrand

Abstract read
In one paragraph

Article in Molecular microbiology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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2 · The registry

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3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Yinping QinDepartment of Microbiology, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.
Carrie Keenan
Stephen K Farrand

Funding

CELL-CELL SIGNALLING IN MICROBE-HOST INTERACTIONSR01GM052465 · NIGMS · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI FARRAND, STEPHEN KENDALL · 1995 to 2007
$2.6M
NIGMS NIH HHS R01 GM052465NIGMS NIH HHS R01 GM52465
6 · The paper itself

Abstract

Positive control (PC) mutants defining 20 residues of the quorum-sensing activator TraR were isolated that bind DNA but show defects in activating transcription from class I, class II or both types of promoters. These PC residues, located in both the N- and C-terminal regions, combine to form three patches, one on the top (II) and two near the DNA binding domain on both lateral faces of the dimer (I and III). Patches I and II, but not patch III, involve residues from both protomers and are essential for activation. TraR-mediated activation in Escherichia coli requires expression of the alpha-subunit of Agrobacterium (alpha(At)). We report that TraR also activates a class II promoter in E. coli when coexpressed with sigma(70)(At). Analyses in E. coli expressing alpha(At), sigma(70)(At) or both subunits indicate that most of the PC residues are important for interactions with alpha(At) and that these interactions are predominant for activation of class II promoters. Using the E. coli system we identified nine residues in the C-terminal domain of alpha(At) that are required for stimulating TraR-mediated activation. We conclude that N- and C-terminal residues of TraR from both protomers cooperate to define regions of the protein important for interactions with RNAP.

Indexed as

Quorum SensingAgrobacterium tumefaciensAmino Acid SubstitutionDNA-Directed RNA PolymerasesEscherichia coliEscherichia coli ProteinsGene Expression Regulation, BacterialMutagenesis, Site-DirectedMutationPlasmidsPromoter Regions, GeneticProtein Structure, TertiarySigma FactorTranscriptional ActivationTranscription FactorsDNA-Directed RNA PolymerasesEscherichia coli ProteinsRNA polymerase sigma 70Sigma FactorTranscription FactorsTraR protein, E coli

Identifiers

PMID19732344
PMCPMC2765545

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.