Evidence map›Paper›PMID 19731906›Full record

ArticleJournal of the American Chemical Society2009

Quantitative glycomics from fluidic glycan microarrays.

X-Y Zhu, Bryan Holtz, Yini Wang, Lai-Xi Wang, Paul E Orndorff, Athena Guo

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Review
  5. Glycomaterials for probing host-pathogen interactions and the immune response.Experimental biology and medicine (Maywood, N.J.) · 2016
    Review
  6. Article
  7. Review
  8. Review
  9. Article
  10. Review
  11. Chemistry of natural glycan microarrays.Current opinion in chemical biology · 2014
    Review
  12. Review
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

X-Y ZhuDepartment of Chemistry, University of Minnesota, Minneapolis, Minnesota 55455, USA. zhu@cm.utexas.edu
Bryan Holtz
Yini Wang
Lai-Xi Wang
Paul E Orndorff
Athena Guo

Funding

Cell Mimic Microarrays for Multivalent Pathogen Characterization & DetectionR43AI077161 · NIAID · MICROSURFACES, INC. · PI GUO, ATHENA · 2008 to 2008
$100k
NIAID NIH HHS 1R43AI077161NIAID NIH HHS R43 AI077161
6 · The paper itself

Abstract

A hallmark of cell-surface processes involving glycans is their multivalent interaction with glycan binding proteins (GBPs). Such a multivalent interaction depends critically on the mobility and density of signaling molecules on the membrane surface. While glycan microarrays have been used in exploring multivalent interactions, the lack of mobility and the difficulty in controlling surface density both limit their quantitative applications. Here we apply a fluidic glycan microarray, with glycan density varying for orders of magnitude, to profile cell surface interaction using a model system, the adhesion of Escherichia coli to mannose. We show the quantitative determination of monovalent and multivalent adhesion channels; the latter can be inhibited by nanopartices presenting a high density of mannosyl groups. These results reveal a new E. coli adhesion mechanism: the switching in the FimH adhesion protein avidity from monovalent to multivalent as the density of mobile mannosyl groups increases; such avidity switching enhances binding affinity and triggers multiple fimbriae anchoring. Affinity enhancement toward FimH has only been observed before for oligo-mannose due to the turn on of secondary interactions outside the mannose binding pocket. We suggest that the new mechanism revealed by the fluidic microarray is of general significance to cell surface interactions: the dynamic clustering of simple sugar groups (homogeneous or heterogeneous) on the fluidic membrane surface may simulate the functions of complex glycan molecules.

Indexed as

Bacterial AdhesionAdhesins, Escherichia coliCell MembraneEscherichia coliFimbriae ProteinsGlycomicsMannoseMicroarray AnalysisMicrofluidic Analytical TechniquesPolysaccharidesAdhesins, Escherichia coliFimbriae ProteinsfimH protein, E coliMannosePolysaccharides

Identifiers

PMID19731906
PMCPMC2755068

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.