Evidence map›Paper›PMID 19730683›Full record

ArticlePLoS genetics2009

The variant rs1867277 in FOXE1 gene confers thyroid cancer susceptibility through the recruitment of USF1/USF2 transcription factors.

Iñigo Landa, Sergio Ruiz-Llorente, Cristina Montero-Conde, Lucía Inglada-Pérez, Francesca Schiavi, Susanna Leskelä, Guillermo Pita, Roger Milne, Javier Maravall, Ignacio Ramos and 23 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 87 papers, 13 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
87citing papers in PubMed, 13 pooled it
6.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

87 citing papers in PubMed, 13 syntheses or guidelines pooled it, 163 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Association Between X-Ray Cross-complementing Group 3 (XRCC3) Thr241Met Polymorphism and Risk of Thyroid Cancer: A Meta-Analysis.Medical science monitor : international medical journal of experimental and clinical research · 2015
    Pooled it
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  6. Association between MTHFR C677T polymorphism and thyroid cancer risk: a meta-analysis.Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine · 2014
    Pooled it
  7. Relationships of FOXE1 and ATM genetic polymorphisms with papillary thyroid carcinoma risk: a meta-analysis.Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine · 2014
    Pooled it
  8. Common genetic variants on FOXE1 contributes to thyroid cancer susceptibility: evidence based on 16 studies.Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine · 2014
    Pooled it
  9. Association between TP53 Arg72Pro polymorphism and thyroid carcinoma risk.Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine · 2014
    Pooled it
  10. Significant associations between X-ray repair cross-complementing group 3 genetic polymorphisms and thyroid cancer risk.Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine · 2014
    Pooled it
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  14. Trial
  15. Article
  16. Identification of GermlineInternational journal of molecular sciences · 2024
    Article
  17. Review
  18. Reduced expression ofFrontiers in endocrinology · 2024
    Article
  19. Review
  20. Article

27 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

33 authors at 19 institutions in 3 countries.

Iñigo LandaHereditary Endocrine Cancer Group, Spanish National Cancer Research Centre (CNIO), Madrid, Spain.
Sergio Ruiz-Llorente
Cristina Montero-Conde
Lucía Inglada-Pérez
Francesca Schiavi
Susanna Leskelä
Guillermo Pita
Roger Milne
Javier Maravall
Ignacio Ramos
Víctor Andía
Paloma Rodríguez-Poyo
Antonino Jara-Albarrán
Amparo Meoro
Cristina del Peso
Luis Arribas
Pedro Iglesias
Javier Caballero
Joaquín Serrano
Antonio Picó
Francisco Pomares
Gabriel Giménez
Pedro López-Mondéjar
Roberto Castello
Isabella Merante-Boschin
Maria-Rosa Pelizzo
Didac Mauricio
Giuseppe Opocher
Cristina Rodríguez-Antona
Anna González-Neira
Xavier Matías-Guiu
Pilar Santisteban
Mercedes Robledo
Spanish National Cancer Research Centre · ESHospital General Universitario Gregorio Marañón · ESBiomedical Research Institute of Lleida · ESHospital General Universitario de Alicante Doctor Balmis · ESHospital Universitario Reina Sofía · ESUniversidad Autónoma de Madrid · ESUniversity of Padua · ITConsejo Superior de Investigaciones Científicas · ESDeleted InstitutionHospital Arnau de Vilanova · ESHospital General De Segovia · ESHospital General Universitario de Elche · ESHospital Marina Baixa · ESHospital Reina Sofía de Murcia · ESHospital Universitari Arnau de Vilanova · ESInstituto de Salud Carlos III · ESIstituti di Ricovero e Cura a Carattere Scientifico · ITIstituto Oncologico Veneto · ITUniversity of Verona · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In order to identify genetic factors related to thyroid cancer susceptibility, we adopted a candidate gene approach. We studied tag- and putative functional SNPs in genes involved in thyroid cell differentiation and proliferation, and in genes found to be differentially expressed in thyroid carcinoma. A total of 768 SNPs in 97 genes were genotyped in a Spanish series of 615 cases and 525 controls, the former comprising the largest collection of patients with this pathology from a single population studied to date. SNPs in an LD block spanning the entire FOXE1 gene showed the strongest evidence of association with papillary thyroid carcinoma susceptibility. This association was validated in a second stage of the study that included an independent Italian series of 482 patients and 532 controls. The strongest association results were observed for rs1867277 (OR[per-allele] = 1.49; 95%CI = 1.30-1.70; P = 5.9x10(-9)). Functional assays of rs1867277 (NM_004473.3:c.-283G>A) within the FOXE1 5' UTR suggested that this variant affects FOXE1 transcription. DNA-binding assays demonstrated that, exclusively, the sequence containing the A allele recruited the USF1/USF2 transcription factors, while both alleles formed a complex in which DREAM/CREB/alphaCREM participated. Transfection studies showed an allele-dependent transcriptional regulation of FOXE1. We propose a FOXE1 regulation model dependent on the rs1867277 genotype, indicating that this SNP is a causal variant in thyroid cancer susceptibility. Our results constitute the first functional explanation for an association identified by a GWAS and thereby elucidate a mechanism of thyroid cancer susceptibility. They also attest to the efficacy of candidate gene approaches in the GWAS era.

Indexed as

Genetic Predisposition to DiseaseGenetic VariationAdultBase SequenceBinding SitesCase-Control StudiesFemaleForkhead Transcription FactorsHumansMaleMiddle AgedMolecular Sequence DataPolymorphism, Single NucleotidePromoter Regions, GeneticProtein BindingSpainForkhead Transcription FactorsFOXE1 protein, humanUpstream Stimulatory FactorsUSF1 protein, humanUSF2 protein, human

Identifiers

PMID19730683
PMCPMC2727793
OpenAlexW2077495579

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.