Evidence map›Paper›PMID 19729519›Full record

ArticleBlood2009

The role and regulation of friend of GATA-1 (FOG-1) during blood development in the zebrafish.

Julio D Amigo, Gabriele E Ackermann, John J Cope, Ming Yu, Jeffrey D Cooney, Dongdong Ma, Nathaniel B Langer, Ebrahim Shafizadeh, George C Shaw, Wyatt Horsely and 15 more

Open access · bronzeAbstract read
In one paragraph

Article in Blood, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
1.6field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 45 citations in OpenAlex.

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  10. The zebrafish: A fintastic model for hematopoietic development and disease.Wiley interdisciplinary reviews. Developmental biology · 2018
    Review
  11. Expression ofFrontiers in neuroanatomy · 2018
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 4 institutions in 1 country.

Julio D AmigoDepartment of Medicine, Division of Hematology, Brigham & Women's Hospital, Boston, MA 02115, USA.
Gabriele E Ackermann
John J Cope
Ming Yu
Jeffrey D Cooney
Dongdong Ma
Nathaniel B Langer
Ebrahim Shafizadeh
George C Shaw
Wyatt Horsely
Nikolaus S Trede
Alan J Davidson
Bruce A Barut
Yi Zhou
Sarah A Wojiski
David Traver
Tyler B Moran
George Kourkoulis
Karl Hsu
John P Kanki
Dhvanit I Shah
Hui Feng Lin
Robert I Handin
Alan B Cantor
Barry H Paw
Brigham and Women's Hospital · USBoston Children's Hospital · USDana-Farber Cancer Institute · USHarvard University · US

Funding

TRANSCRIPTION FACTOR GATA-1 IN TERMINAL ERYTHROID DEVELOPMENTP01HL032262 · NHLBI · CHILDREN'S HOSPITAL BOSTON · PI ZON, LEONARD IRA · 1985 to 2021
$38.9M
Frascati: mitochondrial transporter and erythropoiesisR01DK070838 · NIDDK · BRIGHAM AND WOMEN'S HOSPITAL · PI PAW, BARRY H · 2007 to 2011
$1.8M
Zebrafish Genetics to Identify Genes Involved in HematopoiesisK01DK085217 · NIDDK · BRIGHAM AND WOMEN'S HOSPITAL · PI SHAH, DHVANIT INDRAVADAN · 2010 to 2014
$794k
NHLBI NIH HHS P01 HL032262NIDDK NIH HHS K01 DK085217NIDDK NIH HHS R01 DK070838
6 · The paper itself

Abstract

The nuclear protein FOG-1 binds transcription factor GATA-1 to facilitate erythroid and megakaryocytic maturation. However, little is known about the function of FOG-1 during myeloid and lymphoid development or how FOG-1 expression is regulated in any tissue. We used in situ hybridization, gain- and loss-of-function studies in zebrafish to address these problems. Zebrafish FOG-1 is expressed in early hematopoietic cells, as well as heart, viscera, and paraspinal neurons, suggesting that it has multifaceted functions in organogenesis. We found that FOG-1 is dispensable for endoderm specification but is required for endoderm patterning affecting the expression of late-stage T-cell markers, independent of GATA-1. The suppression of FOG-1, in the presence of normal GATA-1 levels, induces severe anemia and thrombocytopenia and expands myeloid-progenitor cells, indicating that FOG-1 is required during erythroid/myeloid commitment. To functionally interrogate whether GATA-1 regulates FOG-1 in vivo, we used bioinformatics combined with transgenic assays. Thus, we identified 2 cis-regulatory elements that control the tissue-specific gene expression of FOG-1. One of these enhancers contains functional GATA-binding sites, indicating the potential for a regulatory loop in which GATA factors control the expression of their partner protein FOG-1.

Indexed as

Gene Expression Regulation, DevelopmentalNuclear ProteinsZebrafish ProteinsAnimalsEmbryonic DevelopmentGATA1 Transcription FactorHematopoiesisIn Situ HybridizationOligonucleotide Array Sequence AnalysisPolymerase Chain ReactionRegulatory Elements, TranscriptionalZebrafishgata1a protein, zebrafishGATA1 Transcription FactorNuclear ProteinsZebrafish Proteins

Identifiers

PMID19729519
PMCPMC2780302
OpenAlexW2058912354

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.