Evidence map›Paper›PMID 19729382›Full record

ArticleGlycobiology2009

Modeling a congenital disorder of glycosylation type I in C. elegans: a genome-wide RNAi screen for N-glycosylation-dependent loci.

Weston B Struwe, Bethany L Hughes, David W Osborn, Erica D Boudreau, Kristin M D Shaw, Charles E Warren

Open access · greenAbstract read
In one paragraph

Article in Glycobiology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
0.4field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Measurements of Physiological Stress Responses in C. Elegans.Journal of visualized experiments : JoVE · 2020
    Article
  7. Article
  8. Article
  9. N-glycomic Complexity in Anatomical Simplicity:Frontiers in molecular biosciences · 2019
    Review
  10. Review
  11. Article
  12. Activation of the endoplasmic reticulum unfolded protein response by lipid disequilibrium without disturbed proteostasis in vivo.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  13. Article
  14. Review
  15. Article
  16. Review
  17. Review
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Weston B StruweDepartment of Biochemistry and Molecular Biology, University of New Hampshire, Durham, NH 03824, USA. weston.struwe@nibrt.ie
Bethany L Hughes
David W Osborn
Erica D Boudreau
Kristin M D Shaw
Charles E Warren
University of New Hampshire · US

Funding

CORE--PROTEOMICSP20RR016459 · NCRR · UNIVERSITY OF NEW HAMPSHIRE · PI REINHOLD, VERNON NYE · 2001 to 2003
$5.6M
NCRR NIH HHS RR016459
6 · The paper itself

Abstract

Inefficient glycosylation caused by defective synthesis of lipid-linked oligosaccharide donor results in multi-systemic syndromes known as congenital disorders of glycosylation type I (CDG-I). Strong loss of function mutations are embryonic lethal, patients with partial losses of function are occasionally born but are very ill, presenting with defects in virtually every tissue. CDG-I clinical expression varies considerably and ranges from very mild to severe, and the underlying cause of the variable clinical features is not yet understood. We postulate that accompanying defects in an individual's genetic background enhance the severity of CDG-I clinical phenotypes. Since so many protein structures and functions are compromised in CDG-I illnesses, the gene products that are dependent on N-linked glycosylation which cause lethality or particular symptoms are difficult to resolve. The power of genetic silencing that is a characteristic of C. elegans has allowed us to systematically dissect the complex glycosylation phenotype observed in CDG-I patients into specific glycan-dependent gene products. To accomplish this, we inhibited glycosylation with a sub-phenotypic dose of tunicamycin, reduced single genes by RNA interference, and then sought loci where the combination caused a synthetic or dramatically enhanced phenotype. This screen has identified genes in C. elegans that require N-linked glycans to function properly as well as candidate gene homologues that may enhance the clinical severity of CDG-I disorders in humans.

Indexed as

Caenorhabditis elegansDisease Models, AnimalAnimalsAnti-Bacterial AgentsCarbohydrate Metabolism, Inborn ErrorsChromosome MappingDrug ResistanceGenetic LociGlycosylationHumansPhenotypeRNA InterferenceRNA, Small InterferingTunicamycinAnti-Bacterial AgentsRNA, Small InterferingTunicamycin

Identifiers

PMID19729382
PMCPMC2782245
OpenAlexW2118305416

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.