Evidence map›Paper›PMID 19729033›Full record

ReviewMolecular aspects of medicine2009

The genome and variation of Bacillus anthracis.

Paul Keim, Jeffrey M Gruendike, Alexandra M Klevytska, James M Schupp, Jean Challacombe, Richard Okinaka

Open access · greenAbstract readReview
In one paragraph

Review in Molecular aspects of medicine, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 98 citations in OpenAlex.

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  17. You Can'tFrontiers in microbiology · 2020
    Review
  18. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Paul KeimThe Microbial Genetics and Genomics Center, Northern Arizona University, Flagstaff AZ 86011-4073, USA. Paul.Keim@nau.edu
Jeffrey M Gruendike
Alexandra M Klevytska
James M Schupp
Jean Challacombe
Richard Okinaka
Northern Arizona University · USJoint Genome Institute · USLos Alamos National Laboratory · USTranslational Genomics Research Institute · US

Funding

ANTHRAX MOLECULAR EVOLUTION, DIVERSITY AND EPIDEMIOLOGYR01GM060795 · NIGMS · NORTHERN ARIZONA UNIVERSITY · PI KEIM, PAUL STEPHEN · 2000 to 2003
$1.1M
NIGMS NIH HHS R01 GM060795
6 · The paper itself

Abstract

The Bacillus anthracis genome reflects its close genetic ties to Bacillus cereus and Bacillus thuringiensis but has been shaped by its own unique biology and evolutionary forces. The genome is comprised of a chromosome and two large virulence plasmids, pXO1 and pXO2. The chromosome is mostly co-linear among B. anthracis strains and even with the closest near neighbor strains. An exception to this pattern has been observed in a large inversion in an attenuated strain suggesting that chromosome co-linearity is important to the natural biology of this pathogen. In general, there are few polymorphic nucleotides among B. anthracis strains reflecting the short evolutionary time since its derivation from a B. cereus-like ancestor. The exceptions to this lack of diversity are the variable number tandem repeat (VNTR) loci that exist in genic and non genic regions of the chromosome and both plasmids. Their variation is associated with high mutability that is driven by rapid insertion and deletion of the repeats within an array. A notable example is found in the vrrC locus which is homologous to known DNA translocase genes from other bacteria.

Indexed as

Chromosomes, BacterialGenetic VariationGenome, BacterialAnthraxBacillus anthracisDNA, BacterialEvolution, MolecularGenes, BacterialMinisatellite RepeatsPhylogenyPlasmidsVirulenceDNA, Bacterial

Identifiers

PMID19729033
PMCPMC3034159
OpenAlexW2086568815

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.