Evidence map›Paper›PMID 19726524›Full record

ArticleJournal of virology2009

The heptad repeat 2 domain is a major determinant for enhanced human immunodeficiency virus type 1 (HIV-1) fusion and pathogenicity of a highly pathogenic HIV-1 Env.

Vijay Sivaraman, Liguo Zhang, Eric G Meissner, Jerry L Jeffrey, Lishan Su

Abstract read
In one paragraph

Article in Journal of virology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Vijay SivaramanDepartment of Microbiology and Immunology, School of Medicine, The University of North Carolina, Chapel Hill, North Carolina 27599-7295, USA.
Liguo Zhang
Eric G Meissner
Jerry L Jeffrey
Lishan Su

Funding

Molecular Biology of Viral Diseases Predoctoral Training GrantT32AI007419 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Mark T Heise, CARY A MOODY · 1993 to 2026
$4.7M
HIV-1 Replication and Pathogenesis in the Human ThymusR01AI041356 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI SU, LISHAN · 1998 to 2007
$2.2M
RHOA EFFECTOR IN HIV-1 REPLICATION AND PATHOGENESISR01AI048407 · NIAID · UNIVERSITY OF NORTH CAROLINA CHAPEL HILL · PI SU, LISHAN · 2000 to 2004
$1.6M
Treg in HIV-1 Replication and PathogenesisR01AI077454 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI SU, LISHAN · 2008 to 2011
$1.5M
Modulation of HIV-1 Replication and T Cell Activation by FoxP3R56AI048407 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI SU, LISHAN · 2007 to 2007
$363k
NIAID NIH HHS AI048407NIAID NIH HHS AI077454NIAID NIH HHS AI41356NIAID NIH HHS R01 AI041356NIAID NIH HHS R01 AI048407NIAID NIH HHS R01 AI077454NIAID NIH HHS R56 AI048407NIAID NIH HHS T32 AI007419NIAID NIH HHS T32 AI07419
6 · The paper itself

Abstract

Human immunodeficiency virus type 1 (HIV-1)-mediated depletion of CD4+ lymphocytes in an infected individual is the hallmark of progression to AIDS. However, the mechanism for this depletion remains unclear. To identify mechanisms of HIV-1-mediated CD4 T-cell death, two similar viral isolates obtained from a rapid progressor patient with significantly different pathogenic phenotypes were studied. One isolate (R3A) demonstrates enhanced pathogenesis in both in vivo models and relevant ex vivo lymphoid organ model systems compared to another isolate, R3B. The pathogenic determinants were previously mapped to the V5-gp41 envelope region, correlating functionally with enhanced fusion activity and elevated CXCR4 binding affinity. To further elucidate specific differences between R3A and R3B within the V5-gp41 domains that enhance CD4 depletion, R3A-R3B chimeras to study the V5-gp41 region were developed. Our data demonstrate that six residues in the ectodomain of R3A provide the major determinant for both enhanced Env-cell fusion and pathogenicity. Furthermore, three amino acid differences in the heptad repeat 2 (HR-2) domain of R3A determined its fusion activity and significantly elevated its pathogenic activity. The chimeric viruses with enhanced fusion activity, but not elevated CXCR4 affinity, correlated with high pathogenicity in the thymus organ. We conclude that the functional domain of a highly pathogenic HIV-1 Env is determined by mutations in the HR-2 region that contribute to enhanced fusion and CD4 T-cell depletion.

Indexed as

CD4-Positive T-LymphocytesCell Lineenv Gene Products, Human Immunodeficiency VirusHIV-1HIV Envelope Protein gp41HIV InfectionsMutagenesis, Site-DirectedReceptors, CXCR4Virus AttachmentVirus Internalizationenv Gene Products, Human Immunodeficiency VirusHIV Envelope Protein gp41Receptors, CXCR4

Identifiers

PMID19726524
PMCPMC2772666

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.