Evidence map›Paper›PMID 19725718›Full record

ArticleJournal of biomedical optics

Use of an endoscope-compatible probe to detect colonic dysplasia with Fourier transform infrared spectroscopy.

Mark A Mackanos, John Hargrove, Rolf Wolters, Christine B Du, Shai Friedland, Roy M Soetikno, Christopher H Contag, May R Arroyo, James M Crawford, Thomas D Wang

Abstract readEvaluation Study
In one paragraph

Article in Journal of biomedical optics. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Mark A MackanosStanford Medical Center, Department of Pediatrics, E-150 Clark Center, 318 Campus Drive, Stanford, California 94305, USA.
John Hargrove
Rolf Wolters
Christine B Du
Shai Friedland
Roy M Soetikno
Christopher H Contag
May R Arroyo
James M Crawford
Thomas D Wang

Funding

Small Animal Imaging CoreP50CA093990 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI JOHNSON, TIMOTHY D · 2002 to 2012
$19.0M
Novel Molecular Targets of Neoplasia in the EsophagusU54CA105296 · NCI · STANFORD UNIVERSITY · PI CONTAG, CHRISTOPHER H · 2004 to 2008
$5.7M
Task Specific Project 4U54CA136429 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI WANG, THOMAS D · 2008 to 2012
$5.2M
Novel Confocal Microscope for Molecular/Cellular ImagingK08DK067618 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI WANG, THOMAS D · 2003 to 2007
$607k
NCI NIH HHS P50 CA093990NCI NIH HHS P50 CA93990NCI NIH HHS U54 CA105296NCI NIH HHS U54 CA136429NIDDK NIH HHS K08 DK067618NIDDK NIH HHS K08 DK67618
6 · The paper itself

Abstract

Fourier transform infrared (FTIR) spectroscopy is sensitive to the molecular composition of tissue and has the potential to identify premalignant tissue (dysplasia) as an adjunct to endoscopy. We demonstrate collection of mid-infrared absorption spectra with a silver halide (AgCl(0.4)Br(0.6)) optical fiber and use spectral preprocessing to identify optimal subranges that classify colonic mucosa as normal, hyperplasia, or dysplasia. We collected spectra (n=83) in the 950 to 1800 cm(-1) regime on biopsy specimens obtained from human subjects (n=37). Subtle differences in the magnitude of the absorbance peaks at specific wave numbers were observed. The best double binary algorithm for distinguishing normal-versus-dysplasia and hyperplasia-versus-dysplasia was determined from an exhaustive search of spectral intervals and preprocessing techniques. Partial least squares discriminant analysis was used to classify the spectra using a leave-one-subject-out cross-validation strategy. The results were compared with histology reviewed independently by two gastrointestinal pathologists. The optimal thresholds identified resulted in an overall sensitivity, specificity, accuracy, and positive predictive value of 96%, 92%, 93%, and 82%, respectively. These results indicated that mid-infrared absorption spectra collected remotely with an optical fiber can be used to identify colonic dysplasia with high accuracy, suggesting that continued development of this technique for the early detection of cancer is promising.

Indexed as

Endoscopes, GastrointestinalTransducersAdultAgedAged, 80 and overColonic NeoplasmsEquipment DesignEquipment Failure AnalysisFemaleHumansMiddle AgedReproducibility of ResultsSensitivity and SpecificitySpectroscopy, Fourier Transform InfraredSystems Integration

Identifiers

PMID19725718
PMCPMC3232016

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.