Evidence map›Paper›PMID 19720863›Full record

ArticleGenetics2009

Retrograde intraflagellar transport mutants identify complex A proteins with multiple genetic interactions in Chlamydomonas reinhardtii.

Carlo Iomini, Linya Li, Jessica M Esparza, Susan K Dutcher

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 78 papers.

0numbers the graph read from it
0cells of the map it votes in
78citing papers in PubMed
6.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

78 citing papers in PubMed, 120 citations in OpenAlex.

  1. Functions and trafficking mechanisms of RIC-8 inMolecular biology of the cell · 2026
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  7. Cilia Structure and Function in Human Disease.Current opinion in endocrine and metabolic research · 2024
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  8. Primary cilia are critical for tracheoesophageal septation.Developmental dynamics : an official publication of the American Association of Anatomists · 2024
    Article
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  10. Review
  11. Article
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  13. Appearing and disappearing acts of cilia.Journal of biosciences · 2023
    Review
  14. Review
  15. Article
  16. Patterns of cilia gene dysregulations in major psychiatric disorders.Progress in neuro-psychopharmacology & biological psychiatry · 2021
    Article
  17. Article
  18. Intraflagellar transport trains and motors: Insights from structure.Seminars in cell & developmental biology · 2020
    Review
  19. Review
  20. Article

18 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Carlo IominiDepartment of Genetics, Washington University School of Medicine, St. Louis, Missouri 63110, USA.
Linya Li
Jessica M Esparza
Susan K Dutcher
Washington University in St. Louis · US

Funding

GENETIC ANALYSIS OF BASAL BODY FUNCTIONR01GM032843 · NIGMS · WASHINGTON UNIVERSITY · PI DUTCHER, SUSAN K · 1985 to 2018
$5.9M
NIGMS NIH HHS GM-03842NIGMS NIH HHS R01 GM032843
6 · The paper itself

Abstract

The intraflagellar transport machinery is required for the assembly of cilia. It has been investigated by biochemical, genetic, and computational methods that have identified at least 21 proteins that assemble into two subcomplexes. It has been hypothesized that complex A is required for retrograde transport. Temperature-sensitive mutations in FLA15 and FLA17 show defects in retrograde intraflagellar transport (IFT) in Chlamydomonas. We show that IFT144 and IFT139, two complex A proteins, are encoded by FLA15 and FLA17, respectively. The fla15 allele is a missense mutation in a conserved cysteine and the fla17 allele is an in-frame deletion of three exons. The flagellar assembly defect of each mutant is rescued by the respective transgenes. In fla15 and fla17 mutants, bulges form in the distal one-third of the flagella at the permissive temperature and this phenotype is also rescued by the transgenes. These bulges contain the complex B component IFT74/72, but not alpha-tubulin or p28, a component of an inner dynein arm, which suggests specificity with respect to the proteins that accumulate in these bulges. IFT144 and IFT139 are likely to interact with each other and other proteins on the basis of three distinct genetic tests: (1) Double mutants display synthetic flagellar assembly defects at the permissive temperature, (2) heterozygous diploid strains exhibit second-site noncomplemention, and (3) transgenes confer two-copy suppression. Since these tests show different levels of phenotypic sensitivity, we propose they illustrate different gradations of gene interaction between complex A proteins themselves and with a complex B protein (IFT172).

Indexed as

MutationAlgal ProteinsAmino Acid SequenceAnimalsBiological TransportCarrier ProteinsChlamydomonas reinhardtiiChromosome MappingFlagellaGenetic Complementation TestImmunoblottingMolecular Sequence DataProtein BindingProtozoan ProteinsSequence Homology, Amino AcidTemperatureAlgal ProteinsCarrier ProteinsProtozoan Proteins

Identifiers

PMID19720863
PMCPMC2778984
OpenAlexW2033483229

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.