Evidence map›Paper›PMID 19720856›Full record

ArticleGenetics2009

A combined-cross analysis reveals genes with drug-specific and background-dependent effects on drug sensitivity in Saccharomyces cerevisiae.

Hyun Seok Kim, Justin C Fay

Abstract read
In one paragraph

Article in Genetics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Interactions between chromosomal and nonchromosomal elements reveal missing heritability.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  9. Article
  10. The molecular basis of phenotypic variation in yeast.Current opinion in genetics & development · 2013
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Hyun Seok KimComputational Biology Program, Washington University, St. Louis, Missouri 63108, USA.
Justin C Fay

Funding

Genetic basis and evolution of thermotolerance in the Saccharomyces yeast speciesR01GM080669 · NIGMS · WASHINGTON UNIVERSITY · PI FAY, JUSTIN C · 2007 to 2025
$5.3M
GENES AND GENETIC INTERACTIONS UNDERLYING PHARMACOLOGICAL VARIATION IN YEASTR01GM086412 · NIGMS · WASHINGTON UNIVERSITY · PI FAY, JUSTIN C, ZHANG, WEIXIONG · 2009 to 2010
$547k
NIGMS NIH HHS GM-080669NIGMS NIH HHS R01 GM080669NIGMS NIH HHS R01 GM086412
6 · The paper itself

Abstract

Effective pharmacological therapy is often inhibited by variable drug responses and adverse drug reactions. Dissecting the molecular basis of different drug responses is difficult due to complex interactions involving multiple genes, pathways, and cellular processes. We previously found a single nucleotide polymorphism within cystathionine beta-synthase (CYS4) that causes multi-drug sensitivity in a vineyard strain of Saccharomyces cerevisiae. However, not all variation was accounted for by CYS4. To identify additional genes influencing drug sensitivity, we used CYS4 as a covariate and conducted both single- and combined-cross linkage mapping. After eliminating numerous false-positive associations, we identified 16 drug-sensitivity loci, only 3 of which had been previously identified. Of 4 drug-sensitivity loci selected for validation, 2 showed replicated associations in independent crosses, and two quantitative trait genes within these regions, AQY1 and MKT1, were found to have drug-specific and background-dependent effects. Our results suggest that drug response may often depend on interactions between genes with multi-drug and drug-specific effects.

Indexed as

AquaporinsChromosome MappingChromosomes, FungalCrosses, GeneticCystathionine beta-SynthaseDrug Resistance, FungalEpistasis, GeneticGenes, FungalGenotypeModels, GeneticPhenotypeQuantitative Trait LociSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsXenobioticsAquaporinsAQY1 protein, S cerevisiaeCystathionine beta-SynthaseMKT1 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsXenobiotics

Identifiers

PMID19720856
PMCPMC2778966

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.