Evidence map›Paper›PMID 19720825›Full record

ArticleThe Journal of biological chemistry2009

A bifunctional intronic element regulates the expression of the arginine/lysine transporter Cat-1 via mechanisms involving the purine-rich element binding protein A (Pur alpha).

Charlie C Huang, Calin-Bogdan Chiribau, Mithu Majumder, Cheng-Ming Chiang, Ronald C Wek, Robert J Kelm, Kamel Khalili, Martin D Snider, Maria Hatzoglou

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.4field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 1 country.

Charlie C HuangDepartment of Nutrition, School of Medicine, Case Western Reserve University, Cleveland, Ohio 44106-4954, USA.
Calin-Bogdan Chiribau
Mithu Majumder
Cheng-Ming Chiang
Ronald C Wek
Robert J Kelm
Kamel Khalili
Martin D Snider
Maria Hatzoglou
Case Western Reserve University · USIndiana University – Purdue University Indianapolis · USTemple University · USThe University of Texas Southwestern Medical Center · USUniversity of Vermont · US

Funding

Regulation of Gene Expression During StressR01DK053307 · NIDDK · CASE WESTERN RESERVE UNIVERSITY · PI HATZOGLOU, MARIA · 1998 to 2021
$9.6M
Translational Control by NutrientsR01DK060596 · NIDDK · CASE WESTERN RESERVE UNIVERSITY · PI MARIA HATZOGLOU · 2002 to 2026
$6.3M
E2-Cellular Complexes in HPV Chromatin TranscriptionR01CA103867 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI CHIANG, CHENG-MING · 2004 to 2017
$4.0M
Regulation of p53 Transcription by Viral Oncoproteins & Covalent ModificationsR01CA124760 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI CHIANG, CHENG-MING · 2007 to 2012
$1.6M
NCI NIH HHS R01 CA103867NCI NIH HHS R01CA103867NCI NIH HHS R01 CA124760NCI NIH HHS R01CA124760NIDDK NIH HHS R01 DK053307NIDDK NIH HHS R01DK053307NIDDK NIH HHS R01 DK060596NIDDK NIH HHS R01DK060596
6 · The paper itself

Abstract

Expression of the arginine/lysine transporter Cat-1 is highly induced in proliferating and stressed cells via mechanisms that include transcriptional activation. A bifunctional INE (intronic element) within the first intron of the Cat-1 gene was identified and characterized in this study. The INE had high sequence homology to an amino acid response element and was shown to act as a transcriptional enhancer in unstressed cells by binding the transcription factor, purine-rich element binding protein A (Pur alpha). During endoplasmic reticulum stress, binding of Pur alpha to the INE decreased; the element acted as a positive regulator in early stress by binding of the transcription factor ATF4 and as a negative regulator in prolonged stress by binding the stress-induced C/EBP family member, CHOP. We conclude that transcriptional control of the Cat-1 gene is tightly controlled by multiple cis-DNA elements, contributing to regulation of cationic amino acid transport for cell growth and proliferation. In addition, we propose that genes may use stress-response elements such as the INE to support basal expression in the absence of stress.

Indexed as

Gene Expression RegulationActivating Transcription Factor 4AnimalsCationic Amino Acid Transporter 1Cell Line, TumorCell ProliferationDNADNA-Binding ProteinsEndoplasmic ReticulumEnhancer Elements, GeneticHumansIntronsMiceNerve Tissue ProteinsRatsTranscription Factor CHOPActivating Transcription Factor 4ATF4 protein, humanCationic Amino Acid Transporter 1DNADNA-Binding ProteinsNerve Tissue ProteinsPURA protein, humanPura protein, mousePurA protein, ratTranscription Factor CHOPTranscription Factors

Identifiers

PMID19720825
PMCPMC2781645
OpenAlexW1984587901

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.