Evidence map›Paper›PMID 19720753›Full record

ArticleInfection and immunity2009

Genetic structure and distribution of the colibactin genomic island among members of the family Enterobacteriaceae.

Johannes Putze, Claire Hennequin, Jean-Philippe Nougayrède, Wenlan Zhang, Stefan Homburg, Helge Karch, Marie-Agnés Bringer, Corinne Fayolle, Elisabeth Carniel, Wolfgang Rabsch and 5 more

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In one paragraph

Article in Infection and immunity, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 201 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
201citing papers in PubMed, 1 pooled it
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

201 citing papers in PubMed, 1 synthesis or guideline pooled it, 312 citations in OpenAlex.

  1. Colonic neoplasia and celiac disease: A systematic review.World journal of gastroenterology · 2025
    Pooled it
  2. Trial
  3. Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Deciphering the Implications ofPathogens (Basel, Switzerland) · 2026
    Review
  10. Review
  11. Review
  12. Review
  13. Article
  14. Presence and copy number variations ofIranian journal of microbiology · 2026
    Article
  15. Colibactin (Frontiers in microbiology · 2026
    Article
  16. Article
  17. Frontiers in microbiology · 2026
    Review
  18. Article
  19. Review
  20. Article

141 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 7 institutions in 2 countries.

Johannes PutzeJulius-Maximilians-Universität Würzburg, Institut für Molekulare Infektionsbiologie, Röntgenring 11, D-97070 Würzburg, Germany.
Claire Hennequin
Jean-Philippe Nougayrède
Wenlan Zhang
Stefan Homburg
Helge Karch
Marie-Agnés Bringer
Corinne Fayolle
Elisabeth Carniel
Wolfgang Rabsch
Tobias A Oelschlaeger
Eric Oswald
Christiane Forestier
Jörg Hacker
Ulrich Dobrindt
University of Würzburg · DEInstitut Pasteur · FRUniversity of Münster · DEÉcole Nationale Vétérinaire de Toulouse · FRInserm · FRRobert Koch Institute · DEUniversité de Toulouse · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A genomic island encoding the biosynthesis and secretion pathway of putative hybrid nonribosomal peptide-polyketide colibactin has been recently described in Escherichia coli. Colibactin acts as a cyclomodulin and blocks the eukaryotic cell cycle. The origin and prevalence of the colibactin island among enterobacteria are unknown. We therefore screened 1,565 isolates of different genera and species related to the Enterobacteriaceae by PCR for the presence of this DNA element. The island was detected not only in E. coli but also in Klebsiella pneumoniae, Enterobacter aerogenes, and Citrobacter koseri isolates. It was highly conserved among these species and was always associated with the yersiniabactin determinant. Structural variations between individual strains were only observed in an intergenic region containing variable numbers of tandem repeats. In E. coli, the colibactin island was usually restricted to isolates of phylogenetic group B2 and inserted at the asnW tRNA locus. Interestingly, in K. pneumoniae, E. aerogenes, C. koseri, and three E. coli strains of phylogenetic group B1, the functional colibactin determinant was associated with a genetic element similar to the integrative and conjugative elements ICEEc1 and ICEKp1 and to several enterobacterial plasmids. Different asn tRNA genes served as chromosomal insertion sites of the ICE-associated colibactin determinant: asnU in the three E. coli strains of ECOR group B1, and different asn tRNA loci in K. pneumoniae. The detection of the colibactin genes associated with an ICE-like element in several enterobacteria provides new insights into the spread of this gene cluster and its putative mode of transfer. Our results shed light on the mechanisms of genetic exchange between members of the family Enterobacteriaceae.

Indexed as

Base SequenceDNA, BacterialEnterobacteriaceaeEscherichia coli ProteinsFlow CytometryFluorescent Antibody TechniqueGenes, BacterialGene Transfer, HorizontalGenomic IslandsHeLa CellsHumansMicroscopy, ConfocalMolecular Sequence DataPhenotypePolymerase Chain ReactionDNA, BacterialEscherichia coli Proteins

Identifiers

PMID19720753
PMCPMC2772509
OpenAlexW2105048518

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.