Evidence map›Paper›PMID 19720032›Full record

ArticleBiophysical journal2009

Interactions of the GM2 activator protein with phosphatidylcholine bilayers: a site-directed spin-labeling power saturation study.

Jordan D Mathias, Yong Ran, Jeffery D Carter, Gail E Fanucci

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.5field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Ganglioside biochemistry.ISRN biochemistry · 2012
    Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Jordan D MathiasDepartment of Chemistry, University of Florida, Gainesville, Florida, USA.
Yong Ran
Jeffery D Carter
Gail E Fanucci
University of Florida · US

Funding

Membrane Binding Properties of the GM2 Activator ProteinR01GM077232 · NIGMS · UNIVERSITY OF FLORIDA · PI FANUCCI, GAIL E · 2006 to 2010
$1.2M
NIGMS NIH HHS R01 GM077232NIGMS NIH HHS R01GM077232
6 · The paper itself

Abstract

The GM2 activator protein (GM2AP) is an accessory protein that is an essential component in the catabolism of the ganglioside GM2. A function of GM2AP is to bind and extract GM2 from intralysosomal vesicles, forming a soluble protein-lipid complex, which interacts with the hydrolase Hexosaminidase A, the enzyme that cleaves the terminal sugar group of GM2. Here, we used site-directed spin labeling with power saturation electron paramagnetic resonance to determine the surface-bound orientation of GM2AP upon phosphatidylcholine vesicles. Because GM2AP extracts lipid ligands from the vesicle and is undergoing exchange on and off the vesicle surface, we utilized a nickel-chelating lipid to localize the paramagnetic metal collider to the lipid bilayer-aqueous interface. Spin-labeled sites that collide with the lipid-bound metal relaxing agent provide a means for mapping sites of the protein that interact with the lipid bilayer interface. Results show that GM2AP binds to lipid bilayers such that the residues lining the lipid-binding cavity lie on the vesicle surface. This orientation creates a favorable microenvironment that can allow for the lipid tails to flip out of the bilayer directly into the hydrophobic pocket of GM2AP.

Indexed as

Chelating AgentsElectron Spin Resonance SpectroscopyG(M2) Activator ProteinLipid BilayersModels, ChemicalModels, MolecularMutationNickelPhosphatidylcholinesRecombinant ProteinsSpin LabelsWater1-palmitoyl-2-oleoylphosphatidylcholineChelating AgentsG(M2) Activator ProteinLipid BilayersNickelPhosphatidylcholinesRecombinant ProteinsSpin LabelsWater

Identifiers

PMID19720032
PMCPMC2749743
OpenAlexW1990111157

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.