Evidence map›Paper›PMID 19720015›Full record

ArticleBiophysical journal2009

A RasGTP-induced conformational change in C-RAF is essential for accurate molecular recognition.

Kayo Hibino, Tatsuo Shibata, Toshio Yanagida, Yasushi Sako

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 36 citations in OpenAlex.

  1. Review
  2. Multiplexed imaging for probing RAS-RAF interactions in living cells.Biochimica et biophysica acta. Biomembranes · 2023
    Article
  3. Review
  4. Review
  5. Article
  6. Ras-Mediated Activation of the Raf Family Kinases.Cold Spring Harbor perspectives in medicine · 2019
    Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Dynamics of Ras complexes observed in living cells.Sensors (Basel, Switzerland) · 2012
    Article
  16. Article
  17. Mechanistic principles of RAF kinase signaling.Cellular and molecular life sciences : CMLS · 2011
    Review
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Kayo HibinoCellular Informatics Laboratory, RIKEN, Wako, Japan.
Tatsuo Shibata
Toshio Yanagida
Yasushi Sako
RIKEN Advanced Science Institute · JPHiroshima University · JPThe University of Osaka · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The dysregulation of Ras-RAF signaling is associated with many types of human cancer. However, the kinetic and dynamic features of the mutual molecular recognition of Ras and RAF remain unknown. Here, we developed a technique for imaging single-pair fluorescence resonance energy transfer in living cells, and coupled this technique to single-molecule kinetic analysis to investigate how C-RAF (a subtype of RAF) molecules distinguish the active form of Ras (RasGTP) from the inactive form (RasGDP). Functional fragments of C-RAF containing the Ras-binding domains did not detect the switch in Ras activity in living cells as efficiently as did C-RAF. Single-molecule analysis showed that RasGDP associates with closed-conformation C-RAF, whereas the association of C-RAF with RasGTP immediately triggers the open RAF conformation, which induces an effective interaction between C-RAF and RasGTP. Spontaneous conformational changes from closed C-RAF to the open form rarely occur in quiescent cells. The conformational change in C-RAF is so important to Ras-RAF molecular recognition that C-RAF mutants lacking the conformational change cannot distinguish between RasGDP and RasGTP. The manipulation of the conformation of an effector molecule is a newly identified function of RasGTP.

Indexed as

Binding SitesCell MembraneEpidermal Growth FactorFluorescence Resonance Energy TransferGuanosine DiphosphateGuanosine TriphosphateHeLa CellsHumansIntracellular SpaceKineticsMicroscopy, ConfocalModels, BiologicalMutationProtein ConformationProto-Oncogene Proteins c-rafras ProteinsEpidermal Growth FactorGuanosine DiphosphateGuanosine TriphosphateProto-Oncogene Proteins c-rafras Proteins

Identifiers

PMID19720015
PMCPMC3325157
OpenAlexW1965684839

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.