Evidence map›Paper›PMID 19718442›Full record

ArticlePloS one2009

The transcriptional response of Drosophila melanogaster to infection with the sigma virus (Rhabdoviridae).

Jennifer Carpenter, Stephan Hutter, John F Baines, Julia Roller, Sarah S Saminadin-Peter, John Parsch, Francis M Jiggins

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed, 1 pooled it
7.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 1 synthesis or guideline pooled it, 76 citations in OpenAlex.

  1. Pooled it
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  9. DomesticatedGenes · 2020
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  10. Frontiers in cellular and infection microbiology · 2020
    Review
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  13. Transcriptional Responses of theJournal of virology · 2019
    Article
  14. Review
  15. Review
  16. Article
  17. RNAseq Analysis of theG3 (Bethesda, Md.) · 2017
    Article
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Jennifer CarpenterInstitute of Evolutionary Biology, University of Edinburgh, Edinburgh, United Kingdom. jenny@jennycarpenter.com
Stephan Hutter
John F Baines
Julia Roller
Sarah S Saminadin-Peter
John Parsch
Francis M Jiggins
Institut de Biologia Evolutiva · ESUniversity of Edinburgh · GB

Funding

Wellcome TrustWellcome Trust WT081279
6 · The paper itself

Abstract

backgroundBacterial and fungal infections induce a potent immune response in Drosophila melanogaster, but it is unclear whether viral infections induce an antiviral immune response. Using microarrays, we examined the changes in gene expression in Drosophila that occur in response to infection with the sigma virus, a negative-stranded RNA virus (Rhabdoviridae) that occurs in wild populations of D. melanogaster. PRINCIPAL

findingsWe detected many changes in gene expression in infected flies, but found no evidence for the activation of the Toll, IMD or Jak-STAT pathways, which control immune responses against bacteria and fungi. We identified a number of functional categories of genes, including serine proteases, ribosomal proteins and chorion proteins that were overrepresented among the differentially expressed genes. We also found that the sigma virus alters the expression of many more genes in males than in females.

conclusionsThese data suggest that either Drosophila do not mount an immune response against the sigma virus, or that the immune response is not controlled by known immune pathways. If the latter is true, the genes that we identified as differentially expressed after infection are promising candidates for controlling the host's response to the sigma virus.

Indexed as

AnimalsBase SequenceDNA PrimersDown-RegulationDrosophila melanogasterFemaleMalePolymerase Chain ReactionRhabdoviridaeUp-RegulationDNA Primers

Identifiers

PMID19718442
PMCPMC2730013
OpenAlexW1985916344

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.