Evidence map›Paper›PMID 19717436›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2009

Lack of TNFalpha expression protects anaplastic lymphoma kinase-positive T-cell lymphoma (ALK+ TCL) cells from apoptosis.

Qian Zhang, Hong Y Wang, Gauri Bhutani, Xiaobin Liu, Michele Paessler, John W Tobias, Donald Baldwin, Kunchithapadam Swaminathan, Michael C Milone, Mariusz A Wasik

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 1 pooled it
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 1 synthesis or guideline pooled it, 21 citations in OpenAlex.

  1. Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Qian ZhangDepartment of Pathology and Laboratory Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA. qian2@mail.med.upenn.edu
Hong Y Wang
Gauri Bhutani
Xiaobin Liu
Michele Paessler
John W Tobias
Donald Baldwin
Kunchithapadam Swaminathan
Michael C Milone
Mariusz A Wasik
University of Pennsylvania · USCancer Research And Biostatistics · USNational University of Singapore · SG

Funding

Novel role of STAT3 in NPM/ALK-induced oncogenesisR01CA096856 · NCI · UNIVERSITY OF PENNSYLVANIA · PI WASIK, MARIUSZ A. · 2002 to 2013
$3.0M
Jak/STAT signaling in human T-cell lymphomasR01CA089194 · NCI · UNIVERSITY OF PENNSYLVANIA · PI WASIK, MARIUSZ A. · 2001 to 2010
$2.5M
NCI NIH HHS R01 CA089194NCI NIH HHS R01 CA096856NCI NIH HHS R01-CA89194NCI NIH HHS R01-CA96856
6 · The paper itself

Abstract

Here we report that T-cell lymphomas characterized by the expression of anaplastic lymphoma kinase (ALK+ TCL) fail to express the TNFalpha and frequently display DNA methylation of the TNFalpha gene promoter. While only a subset of the ALK+ TCL-derived cell lines showed a high degree of the promoter methylation, all 6 showed low to nondetectable expression of the TNFalpha mRNA, and none expressed the TNFalpha protein. All 14 ALK+ TCL tissue samples examined displayed some degree of the TNFalpha promoter methylation, which was the most prominent in the distal portion of the the promoter. Treatment with a DNA methyltransferase inhibitor, 5'-aza-2'-deoxy-cytidine (5-ADC), reversed the promoter methylation and led to the expression of TNFalpha mRNA and protein. Furthermore, in vitro DNA methylation of the promoter impaired its transcriptional activity in the luciferase reporter assay. This impairment was seen even if only either distal or proximal portion were methylated, with methylation of the former exerting a more profound inhibitory effect. Notably, the ALK+ TCL cell lines uniformly expressed the type 1 TNFalpha receptor (TNF-R1) protein known to transduce the TNFalpha-induced pro-apoptotic signals. Moreover, exogenous TNFalpha inhibited growth of the ALK+ TCL cell lines in a dose-dependent manner and induced activation of the members of the cell apoptotic pathway: Caspase 8 and caspase 3. These findings provide additional rationale for the therapeutic inhibition of DNA methyltransferases in ALK+ TCL. They also suggest that treatment with TNFalpha may be highly effective in this type of lymphoma.

Indexed as

Anaplastic Lymphoma KinaseApoptosisBase SequenceCell Line, TumorDNA MethylationDNA PrimersGene ExpressionHumansLymphoma, Large-Cell, AnaplasticPromoter Regions, GeneticProtein-Tyrosine KinasesReceptor Protein-Tyrosine KinasesReceptors, Tumor Necrosis Factor, Type IRecombinant ProteinsRNA, MessengerRNA, NeoplasmALK protein, humanAnaplastic Lymphoma KinaseDNA PrimersProtein-Tyrosine KinasesReceptor Protein-Tyrosine KinasesReceptors, Tumor Necrosis Factor, Type IRecombinant ProteinsRNA, MessengerRNA, NeoplasmTumor Necrosis Factor-alpha

Identifiers

PMID19717436
PMCPMC2747206
OpenAlexW1974571258

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.