Evidence map›Paper›PMID 19716816›Full record

ArticleDevelopmental biology2009

Non-homeodomain regions of Hox proteins mediate activation versus repression of Six2 via a single enhancer site in vivo.

Alisha R Yallowitz, Ke-Qin Gong, Ilea T Swinehart, Lisa T Nelson, Deneen M Wellik

Open access · greenAbstract read
In one paragraph

Article in Developmental biology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Hox genes in development and beyond.Development (Cambridge, England) · 2023
    Article
  3. Mechanisms Underlying Hox-Mediated Transcriptional Outcomes.Frontiers in cell and developmental biology · 2021
    Review
  4. Review
  5. Article
  6. Journal of immunology (Baltimore, Md. : 1950) · 2017
    Article
  7. Article
  8. Hox genes and evolution.F1000Research · 2016
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Hox transcription factors influence motoneuron identity through the integrated actions of both homeodomain and non-homeodomain regions.Developmental dynamics : an official publication of the American Association of Anatomists · 2012
    Article
  14. Defining and redefining the nephron progenitor population.Pediatric nephrology (Berlin, Germany) · 2011
    Review
  15. Hox genes and kidney development.Pediatric nephrology (Berlin, Germany) · 2011
    Review
  16. Article
  17. Article
  18. Article
  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Alisha R YallowitzDepartment of Cell and Developmental Biology, University of Michigan, Ann Arbor, MI 48109-2200, USA.
Ke-Qin Gong
Ilea T Swinehart
Lisa T Nelson
Deneen M Wellik
University of Michigan · US

Funding

XenograftP30CA046592 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI THEODORE S LAWRENCE · 1988 to 2026
$178.2M
CELLULAR AND MOLECULAR BIOLOGY AT MICHIGANT32GM007315 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI PUTHENVEEDU, MANOJKUMAR A · 1985 to 2021
$12.8M
TRAINING PROGRAM IN ORGANOGENESIST32HD007505 · NICHD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI PASCA DI MAGLIANO, MARINA, SPENCE, JASON · 1997 to 2021
$6.9M
Molecular Genetics of Hox Genes and Kidney DevelopmentR01DK071929 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI WELLIK, DENEEN M · 2006 to 2010
$1.5M
The Role of Hox11 Paralogous Genes in Prostate DevelopmentR21DK077045 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI WELLIK, DENEEN M · 2007 to 2008
$406k
NCI NIH HHS 5 P30 CA46592NCI NIH HHS P30 CA046592NICHD NIH HHS T32 HD007505NICHD NIH HHS T32-HD007505NIDDK NIH HHS DK071929NIDDK NIH HHS DK077045NIDDK NIH HHS R01 DK071929NIDDK NIH HHS R21 DK077045NIGMS NIH HHS T32 GM007315
6 · The paper itself

Abstract

Hox genes control many developmental events along the AP axis, but few target genes have been identified. Whether target genes are activated or repressed, what enhancer elements are required for regulation, and how different domains of the Hox proteins contribute to regulatory specificity are poorly understood. Six2 is genetically downstream of both the Hox11 paralogous genes in the developing mammalian kidney and Hoxa2 in branchial arch and facial mesenchyme. Loss-of-function of Hox11 leads to loss of Six2 expression and loss-of-function of Hoxa2 leads to expanded Six2 expression. Herein we demonstrate that a single enhancer site upstream of the Six2 coding sequence is responsible for both activation by Hox11 proteins in the kidney and repression by Hoxa2 in the branchial arch and facial mesenchyme in vivo. DNA-binding activity is required for both activation and repression, but differential activity is not controlled by differences in the homeodomains. Rather, protein domains N- and C-terminal to the homeodomain confer activation versus repression activity. These data support a model in which the DNA-binding specificity of Hox proteins in vivo may be similar, consistent with accumulated in vitro data, and that unique functions result mainly from differential interactions mediated by non-homeodomain regions of Hox proteins.

Indexed as

Enhancer Elements, GeneticGene Expression Regulation, DevelopmentalAmino Acid SequenceAnimalsBranchial RegionDNAGenes, ReporterHomeodomain ProteinsIntracellular Signaling Peptides and ProteinsMiceMice, TransgenicMolecular Sequence DataNuclear ProteinsPAX2 Transcription FactorProtein IsoformsProtein Structure, TertiaryDNAEya1 protein, mouseHomeodomain ProteinsIntracellular Signaling Peptides and ProteinsNuclear ProteinsPax2 protein, mousePAX2 Transcription FactorProtein IsoformsProtein Tyrosine PhosphatasesRecombinant Fusion ProteinsSix2 protein, mouseTranscription Factors

Identifiers

PMID19716816
PMCPMC2791332
OpenAlexW2168000552

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.