Evidence map›Paper›PMID 19715355›Full record

ArticleBiochemistry2009

Hydrophobic photolabeling studies identify the lipid-protein interface of the 5-HT3A receptor.

Mitesh Sanghvi, Ayman K Hamouda, Margaret I Davis, Russell A Morton, Shouryadeep Srivastava, Akash Pandhare, Phaneendra K Duddempudi, Tina K Machu, David M Lovinger, Jonathan B Cohen and 1 more

Open access · greenAbstract readComparative Study
In one paragraph

Article in Biochemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.5field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 1 country.

Mitesh SanghviDepartment of Pharmacology and Neuroscience and Center for Membrane Protein Research, School of Medicine, Texas Tech University Health Sciences Center, Lubbock, Texas 79430, USA.
Ayman K Hamouda
Margaret I Davis
Russell A Morton
Shouryadeep Srivastava
Akash Pandhare
Phaneendra K Duddempudi
Tina K Machu
David M Lovinger
Jonathan B Cohen
Michael P Blanton
Texas Tech University · USNational Institute on Alcohol Abuse and Alcoholism · USHarvard University · USTexas Tech University Health Sciences Center · USUniversity of North Texas Health Science Center · US

Funding

Synthetic Chemistry CoreP01GM058448 · NIGMS · MASSACHUSETTS GENERAL HOSPITAL · PI MILLER, KEITH W · 1999 to 2018
$33.6M
Synaptic Transmission: Modulation, Plasticity And Effects Of Drugs Of AbuseZIAAA000407 · NIAAA · NATIONAL INSTITUTE ON ALCOHOL ABUSE AND ALCOHOLISM · PI LOVINGER, DAVID M · 2009 to 2025
$29.6M
Ligand Binding Domains in the 5-HT3 ReceptorR01NS043438 · NINDS · UNIVERSITY OF NORTH TEXAS HLTH SCI CTR · PI MACHU, TINA K · 2003 to 2006
$980k
NIGMS NIH HHS GM-58448NIGMS NIH HHS P01 GM058448NINDS NIH HHS NS-43438NINDS NIH HHS R01 NS043438
6 · The paper itself

Abstract

A HEK-293 cell line that stably expresses mouse 5-HT(3A)Rs containing a C-terminal extension that confers high-affinity binding of alpha-bungarotoxin (alphaBgTx) was established (alphaBgTx-5-HT(3A)Rs) and used to purify alphaBgTx-5-HT(3A)Rs in a lipid environment for use in structural studies using photoaffinity labeling. alphaBgTx-5-HT(3A)Rs were expressed robustly (60 pmol of [(3)H]BRL-43694 binding sites (approximately 3 microg of receptor) per milligram of protein) and displayed the same functional properties as wild-type receptors (serotonin EC(50) = 5.3 +/- 0.04 microM). While [(125)I]alphaBgTx bound to the alphaBgTx-5-HT(3A)Rs with high affinity (K(d) = 11 nM), application of nonradioactive alphaBgTx (up to 300 microM) had no effect on serotonin-induced current responses. alphaBgTx-5-HT(3A)Rs were purified on an alphaBgTx-derivatized affinity column from detergent extracts in milligram quantities and at approximately 25% purity. The hydrophobic photolabel 3-trifluoromethyl-3-(m-[(125)I]iodophenyl)diazirine ([(125)I]TID) was used to identify the amino acids at the lipid-protein interface of purified and lipid-reconstituted alphaBgTx-5-HT(3A)Rs. [(125)I]TID photoincorporation into the alphaBgTx-5-HT(3A)R subunit was initially mapped to subunit proteolytic fragments of 8 kDa, containing the M4 transmembrane segment and approximately 60% of incorporated (125)I, and 17 kDa, containing the M1-M3 transmembrane segments. Within the M4 segment, [(125)I]TID labeled Ser(451), equivalent to the [(125)I]TID-labeled residue Thr(422) at the lipid-exposed face of the Torpedo nicotinic acetylcholine receptor (nAChR) alpha1M4 alpha-helix. These results provide a first definition of the surface of the 5-HT(3A)R M4 helix that is exposed to lipid and establish that this surface is equivalent to the surface exposed to lipid in the Torpedo nAChR.

Indexed as

AnimalsBungarotoxinsCell LineHumansHydrophobic and Hydrophilic InteractionsLipoproteinsMicePhotoaffinity LabelsReceptors, NicotinicReceptors, Serotonin, 5-HT3TorpedoBungarotoxinsHtr3a protein, mouseLipoproteinsPhotoaffinity LabelsReceptors, NicotinicReceptors, Serotonin, 5-HT3

Identifiers

PMID19715355
PMCPMC2778300
OpenAlexW2164555843

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.