Evidence map›Paper›PMID 19714377›Full record

ArticleNeurogenetics2010

Increased transcript diversity: novel splicing variants of Machado-Joseph disease gene (ATXN3).

Conceição Bettencourt, Cristina Santos, Rafael Montiel, Maria do Carmo Costa, Pablo Cruz-Morales, Liliana Ribeiro Santos, Nelson Simões, Teresa Kay, João Vasconcelos, Patrícia Maciel and 1 more

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Article in Neurogenetics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.0field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 46 citations in OpenAlex.

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  10. STRs: Ancient Architectures of the Genome beyond the Sequence.Journal of molecular neuroscience : MN · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 4 countries.

Conceição BettencourtCenter of Research in Natural Resources (CIRN), University of the Azores, Ponta Delgada, Portugal. mcbettencourt@uac.pt
Cristina Santos
Rafael Montiel
Maria do Carmo Costa
Pablo Cruz-Morales
Liliana Ribeiro Santos
Nelson Simões
Teresa Kay
João Vasconcelos
Patrícia Maciel
Manuela Lima
Universidade dos Açores · PTCenter for Research and Advanced Studies of the National Polytechnic Institute · MXUniversity of Minho · PTHospital de Dona Estefânia · PTHospital do Divino Espírito Santo · PTUniversitat Autònoma de Barcelona · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Machado-Joseph disease (MJD) is a late-onset neurodegenerative disorder that presents clinical heterogeneity not completely explained by its causative mutation. MJD is caused by an expansion of a CAG tract at exon 10 of the ATXN3 gene (14q32.1), which encodes for ataxin-3. The main goal of this study was to analyze the occurrence of alternative splicing at the ATXN3 gene, by sequencing a total of 415 cDNAs clones (from 20 MJD patients and 14 controls). Two novel exons are described for the ATXN3 gene. Fifty-six alternative splicing variants, generated by four types of splicing events, were observed. From those variants, 50 were not previously described, and 26 were only found in MJD patients samples. Most of the variants (85.7%) present frameshift, which leads to the appearance of premature stop codons. Thirty-seven of the observed variants constitute good targets to nonsense-mediated decay, the remaining are likely to be translated into at least 20 different isoforms. The presence of ataxin-3 domains was assessed, and consequences of domain disruption are discussed. The present study demonstrates high variability in the ATXN3 gene transcripts, providing a basis for further investigation on the contribution of alternative splicing to the MJD pathogenic process, as well as to the larger group of the polyglutamine disorders.

Indexed as

Alternative SplicingAtaxin-3Base SequenceHumansMachado-Joseph DiseaseModels, MolecularMolecular Sequence DataNerve Tissue ProteinsNuclear ProteinsProtein ConformationRepressor ProteinsAtaxin-3ATXN3 protein, humanNerve Tissue ProteinsNuclear ProteinsRepressor Proteins

Identifiers

PMID19714377
OpenAlexW2163930643

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.