Evidence map›Paper›PMID 19714217›Full record

ArticlePLoS genetics2009

Regulation of heterochromatin assembly on unpaired chromosomes during Caenorhabditis elegans meiosis by components of a small RNA-mediated pathway.

Xingyu She, Xia Xu, Alexander Fedotov, William G Kelly, Eleanor M Maine

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed
2.6field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 89 citations in OpenAlex.

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  12. Multigenerational Regulation of theAnnual review of genetics · 2019
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  13. Biology of theGenetics · 2019
    Review
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  17. Functional Interactions BetweenG3 (Bethesda, Md.) · 2018
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Xingyu SheDepartment of Biology, Syracuse University, Syracuse, New York, United States of America.
Xia Xu
Alexander Fedotov
William G Kelly
Eleanor M Maine
Syracuse University · USEmory University · US

Funding

Genetic Silencing in Germline Maintenance and FunctionR01GM063102 · NIGMS · EMORY UNIVERSITY · PI KELLY, WILLIAM G. · 2002 to 2010
$2.6M
NIGMS NIH HHS R01 GM063102
6 · The paper itself

Abstract

Many organisms have a mechanism for down regulating the expression of non-synapsed chromosomes and chromosomal regions during meiosis. This phenomenon is thought to function in genome defense. During early meiosis in Caenorhabditis elegans, unpaired chromosomes (e.g., the male X chromosome) become enriched for a modification associated with heterochromatin and transcriptional repression, dimethylation of histone H3 on lysine 9 (H3K9me2). This enrichment requires activity of the cellular RNA-directed RNA polymerase, EGO-1. Here we use genetic mutation, RNA interference, immunofluorescence microscopy, fluorescence in situ hybridization, and molecular cloning methods to identify and analyze three additional regulators of meiotic H3K9me2 distribution: CSR-1 (a Piwi/PAZ/Argonaute protein), EKL-1 (a Tudor domain protein), and DRH-3 (a DEAH/D-box helicase). In csr-1, ekl-1, and drh-3 mutant males, we observed a reduction in H3K9me2 accumulation on the unpaired X chromosome and an increase in H3K9me2 accumulation on paired autosomes relative to controls. We observed a similar shift in H3K9me2 pattern in hermaphrodites that carry unpaired chromosomes. Based on several assays, we conclude that ectopic H3K9me2 accumulates on paired and synapsed chromosomes in these mutants. We propose alternative models for how a small RNA-mediated pathway may regulate H3K9me2 accumulation during meiosis. We also describe the germline phenotypes of csr-1, ekl-1, and drh-3 mutants. Our genetic data suggest that these factors, together with EGO-1, participate in a regulatory network to promote diverse aspects of development.

Indexed as

MeiosisAnimalsCaenorhabditis elegansCaenorhabditis elegans ProteinsChromosomesDEAD-box RNA HelicasesGerm CellsHeterochromatinHistonesMaleMethylationRNA-Dependent RNA PolymeraseRNA InterferenceRNA, Small InterferingCaenorhabditis elegans ProteinsDEAD-box RNA HelicasesDrh-3 protein, C elegansEGO-1 protein, C elegansEkl protein, c elegansHeterochromatinHistonesRNA-Dependent RNA PolymeraseRNA, Small Interfering

Identifiers

PMID19714217
PMCPMC2726613
OpenAlexW2090055514

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.