Evidence map›Paper›PMID 19714215›Full record

ArticlePLoS genetics2009

The fission yeast homeodomain protein Yox1p binds to MBF and confines MBF-dependent cell-cycle transcription to G1-S via negative feedback.

Sofia Aligianni, Daniel H Lackner, Steffi Klier, Gabriella Rustici, Brian T Wilhelm, Samuel Marguerat, Sandra Codlin, Alvis Brazma, Robertus A M de Bruin, Jürg Bähler

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 46 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Sofia AligianniDepartment of Genetics, Evolution & Environment and UCL Cancer Institute, University College London, London, United Kingdom.
Daniel H Lackner
Steffi Klier
Gabriella Rustici
Brian T Wilhelm
Samuel Marguerat
Sandra Codlin
Alvis Brazma
Robertus A M de Bruin
Jürg Bähler
University College London · GBEuropean Bioinformatics Institute · GBMRC Laboratory for Molecular Cell Biology · GB

Funding

Cancer Research UK C9546/A6517Medical Research Council G0800297Wellcome Trust
6 · The paper itself

Abstract

The regulation of the G1- to S-phase transition is critical for cell-cycle progression. This transition is driven by a transient transcriptional wave regulated by transcription factor complexes termed MBF/SBF in yeast and E2F-DP in mammals. Here we apply genomic, genetic, and biochemical approaches to show that the Yox1p homeodomain protein of fission yeast plays a critical role in confining MBF-dependent transcription to the G1/S transition of the cell cycle. The yox1 gene is an MBF target, and Yox1p accumulates and preferentially binds to MBF-regulated promoters, via the MBF components Res2p and Nrm1p, when they are transcriptionally repressed during the cell cycle. Deletion of yox1 results in constitutively high transcription of MBF target genes and loss of their cell cycle-regulated expression, similar to deletion of nrm1. Genome-wide location analyses of Yox1p and the MBF component Cdc10p reveal dozens of genes whose promoters are bound by both factors, including their own genes and histone genes. In addition, Cdc10p shows promiscuous binding to other sites, most notably close to replication origins. This study establishes Yox1p as a new regulatory MBF component in fission yeast, which is transcriptionally induced by MBF and in turn inhibits MBF-dependent transcription. Yox1p may function together with Nrm1p to confine MBF-dependent transcription to the G1/S transition of the cell cycle via negative feedback. Compared to the orthologous budding yeast Yox1p, which indirectly functions in a negative feedback loop for cell-cycle transcription, similarities but also notable differences in the wiring of the regulatory circuits are evident.

Indexed as

Cell CycleFeedback, PhysiologicalCell Cycle ProteinsDown-RegulationGene Expression Regulation, FungalHomeodomain ProteinsPromoter Regions, GeneticProtein BindingSchizosaccharomycesSchizosaccharomyces pombe ProteinsTranscription FactorsTranscription, GeneticCell Cycle ProteinsDSC1 protein, S pombeHomeodomain ProteinsSchizosaccharomyces pombe ProteinsTranscription FactorsYox1 protein, S pombe

Identifiers

PMID19714215
PMCPMC2726434
OpenAlexW1998653901

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.