Evidence map›Paper›PMID 19712472›Full record

ArticleBMC oral health2009

Association of a genetic polymorphism (-44 C/G SNP) in the human DEFB1 gene with expression and inducibility of multiple beta-defensins in gingival keratinocytes.

Andrea A Kalus, L Page Fredericks, Beth M Hacker, Henrik Dommisch, Richard B Presland, Janet R Kimball, Beverly A Dale

Open access · goldAbstract read
In one paragraph

Article in BMC oral health, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 49 citations in OpenAlex.

  1. The journal of maternal-fetal & neonatal medicine : the official journal of the European Association of Perinatal Medicine, the Federation of Asia and Oceania Perinatal Societies, the International Society of Perinatal Obstetricians · 2019
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  15. Human polymorphisms as clinical predictors in leprosy.Journal of tropical medicine · 2011
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Andrea A KalusDepartment of Medicine/Dermatology, University of Washington, Seattle, Washington 98195, USA. aamayer@u.washington.edu
L Page Fredericks
Beth M Hacker
Henrik Dommisch
Richard B Presland
Janet R Kimball
Beverly A Dale
University of Washington · USSeattle University · USUniversity of Illinois Urbana-Champaign · US

Funding

SWEET PREFERENCE AND PUBERTYP60DE013061 · NIDCR · UNIVERSITY OF WASHINGTON · PI GREMBOWSKI, DAVID E · 1999 to 2003
$9.2M
Regulation of Beta-Defensin Expression in Oral EpitheliaR01DE013573 · NIDCR · UNIVERSITY OF WASHINGTON · PI CHUNG, WHASUN OH · 2000 to 2009
$3.1M
ORAL BIOLOGY TRAINING SALIVARY SECRETIONST32DE007023 · NIDCR · UNIVERSITY OF WASHINGTON · PI IZUTSU, KENNETH T · 1985 to 2006
$2.3M
NIDCR NIH HHS P60 DE013061NIDCR NIH HHS R01 DE013573NIDCR NIH HHS T32 DE007023
6 · The paper itself

Abstract

backgroundHuman beta-defensins (hBDs) are antimicrobial peptides with a role in innate immune defense. Our laboratory previously showed that a single nucleotide polymorphism (SNP) in the 5' untranslated region of the hBD1 gene (DEFB1), denoted -44 (rs1800972), is correlated with protection from oral Candida. Because this SNP alters the putative mRNA structure, we hypothesized that it alters hBD1 expression.

methodsTransfection of reporter constructs and evaluation of antimicrobial activity and mRNA expression levels in keratinocytes from multiple donors were used to evaluate the effect of this SNP on constitutive and induced levels of expression.

resultsTransfection of CAT reporter constructs containing the 5' untranslated region showed that the -44 G allele yielded a 2-fold increase in CAT protein compared to other common haplotypes suggesting a cis effect on transcription or translation. The constitutive hBD1 mRNA level in human oral keratinocytes was significantly greater in cells from donors with the -44 GG genotype compared to those with the common CC genotype. Surprisingly, the hBD3 mRNA level as well as antimicrobial activity of keratinocyte extracts also correlated with the -44 G allele. Induced levels of hBD1, hBD2, and hBD3 mRNA were evaluated in keratinocytes challenged with Toll-like receptor 2 and 4 ligands, interleukin-1beta, TNFalpha, and interferon-gamma (IFNgamma). In contrast to constitutive expression levels, IFNgamma-induced keratinocyte hBD1 and hBD3 mRNA expression was significantly greater in cells with the common CC genotype, but there was no clear correlation of genotype with hBD2 expression.

conclusionThe DEFB1 -44 G allele is associated with an increase in overall constitutive antimicrobial activity and expression of hBD1 and hBD3 in a manner that is consistent with protection from candidiasis, while the more common C allele is associated with IFNgamma inducibility of these beta-defensins and is likely to be more protective in conditions that enhance IFNgamma expression such as chronic periodontitis. These results suggest a complex relationship between genetics and defensin expression that may influence periodontal health and innate immune responses.

Identifiers

PMID19712472
PMCPMC2739845
OpenAlexW2138896424

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.