Evidence map›Paper›PMID 19710469›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2009

Temporal induction pattern of STAT4 target genes defines potential for Th1 lineage-specific programming.

Seth R Good, Vivian T Thieu, Anubhav N Mathur, Qing Yu, Gretta L Stritesky, Norman Yeh, John T O'Malley, Narayanan B Perumal, Mark H Kaplan

Open access · hybridAbstract read
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 74 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. The molecular details of cytokine signaling via the JAK/STAT pathway.Protein science : a publication of the Protein Society · 2018
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Seth R GoodSchool of Informatics, Indiana University-Purdue University Indianapolis, Indianapolis, IN 46202, USA.
Vivian T Thieu
Anubhav N Mathur
Qing Yu
Gretta L Stritesky
Norman Yeh
John T O'Malley
Narayanan B Perumal
Mark H Kaplan
Indiana University School of MedicineIndiana University – Purdue University Indianapolis · US

Funding

BASIC SCIENCE STUDIES ON GENE THERAPY OF BLOOD DISEASEST32HL007910 · NHLBI · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI Roland W. Herzog, Reuben Kapur · 1999 to 2026
$7.6M
Immunology and Infectious Diseases Training ProgramT32AI060519 · NIAID · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI MARK H KAPLAN · 2004 to 2026
$6.0M
STAT4 IMMUNOLOGYR01AI045515 · NIAID · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI KAPLAN, MARK H · 1999 to 2014
$4.3M
Stat4 ImmunobiologyR56AI045515 · NIAID · INDIANA UNIVERSITY INDIANAPOLIS · PI KAPLAN, MARK H · 2009 to 2009
$385k
NHLBI NIH HHS T32 HL007910NHLBI NIH HHS T32HL007910NIAID NIH HHS AI45515NIAID NIH HHS R01 AI045515NIAID NIH HHS R56 AI045515NIAID NIH HHS T32 AI060519NIAID NIH HHS T32AI060519
6 · The paper itself

Abstract

STAT4 is a critical component in the development of inflammatory adaptive immune responses. It has been extensively characterized as a lineage-determining factor in Th1 development. However, the genetic program activated by STAT4 that results in an inflammatory cell type is not well defined. In this report, we use DNA isolated from STAT4-chromatin immunoprecipitation to perform chromatin immunoprecipitation-on-chip analysis of over 28,000 mouse gene promoters to identify STAT4 targets. We demonstrate that STAT4 binds multiple gene-sets that program distinct components of the Th1 lineage. Although many STAT4 target genes display STAT4-dependent IL-12-inducible expression, other genes displayed IL-12-induced histone modifications but lack induction, possibly due to high relative basal expression. In the subset of genes that STAT4 programs for expression in Th1 cells, IL-12-induced mRNA levels remain increased for a longer time than mRNA from genes that are not programmed. This suggests that STAT4 binding to target genes, while critical, is not the only determinant for STAT4-dependent gene programming during Th1 differentiation.

Indexed as

Gene Regulatory NetworksAnimalsCell DifferentiationCell LineageGene Expression RegulationInterleukin-12MiceRNA, MessengerSTAT4 Transcription FactorTh1 CellsTime FactorsInterleukin-12RNA, MessengerSTAT4 Transcription Factor

Identifiers

PMID19710469
PMCPMC2748807
OpenAlexW2131599301

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.