Evidence map›Paper›PMID 19707792›Full record

ArticleHuman genetics2010

Deletion of an enhancer near DLX5 and DLX6 in a family with hearing loss, craniofacial defects, and an inv(7)(q21.3q35).

Kerry K Brown, Jacob A Reiss, Kate Crow, Heather L Ferguson, Chantal Kelly, Bernd Fritzsch, Cynthia C Morton

Open access · greenAbstract readCase Reports
In one paragraph

Article in Human genetics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
6.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 83 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Cancers · 2021
    Review
  11. Article
  12. Increased Sociability in Mice Lacking IntergenicFrontiers in neuroscience · 2021
    Article
  13. Chemical-induced craniofacial anomalies caused by disruption of neural crest cell development in a zebrafish model.Developmental dynamics : an official publication of the American Association of Anatomists · 2020
    Article
  14. Article
  15. Deletion of a Long-RangeGenetics · 2018
    Article
  16. Zebrafish models of orofacial clefts.Developmental dynamics : an official publication of the American Association of Anatomists · 2017
    Review
  17. Article
  18. Article
  19. Article
  20. Human inversions and their functional consequences.Briefings in functional genomics · 2015
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Kerry K BrownDepartment of Genetics, Harvard Medical School, Boston, MA, USA. kerry_kocher@student.hms.harvard.edu
Jacob A Reiss
Kate Crow
Heather L Ferguson
Chantal Kelly
Bernd Fritzsch
Cynthia C Morton
Brigham and Women's Hospital · USKaiser Permanente · USHarvard University · USUniversity of Iowa · US

Funding

VectorP30CA006516 · NCI · DANA-FARBER CANCER INSTITUTE · PI A. Heather Eliassen · 1985 to 2026
$330.6M
RAPID GENE DISCOVERYP01GM061354 · NIGMS · BRIGHAM AND WOMEN'S HOSPITAL · PI TALKOWSKI, MICHAEL E · 2001 to 2019
$24.3M
CLONING GENES INVOLVED IN HEARINGR01DC003402 · NIDCD · BRIGHAM AND WOMEN'S HOSPITAL · PI MORTON, CYNTHIA CASSON · 1997 to 2012
$4.0M
DISSECTING THE EAR NEUROSENSORY DEVELOPMENT.R01DC005590 · NIDCD · UNIVERSITY OF IOWA · PI FRITZSCH, BERND · 2002 to 2010
$3.3M
Hearing loss associated with chromosomal rearrangementsF31DC007540 · NIDCD · BRIGHAM AND WOMEN'S HOSPITAL · PI BROWN, KERRY KOCHER · 2005 to 2007
$92k
NCI NIH HHS P30 CA006516NCI NIH HHS P30CA06516NIDCD NIH HHS F31 DC007540NIDCD NIH HHS R01 DC003402NIDCD NIH HHS R01 DC005590NIGMS NIH HHS P01 GM061354
6 · The paper itself

Abstract

Precisely regulated temporal and spatial patterns of gene expression are essential for proper human development. Cis-acting regulatory elements, some located at large distances from their corresponding genes, play a critical role in transcriptional control of key developmental genes and disruption of these regulatory elements can lead to disease. We report a three generation family with five affected members, all of whom have hearing loss, craniofacial defects, and a paracentric inversion of the long arm of chromosome 7, inv(7)(q21.3q35). High resolution mapping of the inversion showed that the 7q21.3 breakpoint is located 65 and 80 kb centromeric of DLX6 and DLX5, respectively. Further analysis revealed a 5,115 bp deletion at the 7q21.3 breakpoint. While the breakpoint does not disrupt either DLX5 or DLX6, the syndrome present in the family is similar to that observed in Dlx5 knockout mice and includes a subset of the features observed in individuals with DLX5 and DLX6 deletions, implicating dysregulation of DLX5 and DLX6 in the family's phenotype. Bioinformatic analysis indicates that the 5,115 bp deletion at the 7q21.3 breakpoint could contain regulatory elements necessary for DLX5 and DLX6 expression. Using a transgenic mouse reporter assay, we show that the deleted sequence can drive expression in the inner ear and developing bones of E12.5 embryos. Consequently, the observed familial syndrome is likely caused by dysregulation of DLX5 and/or DLX6 in specific tissues due to deletion of an enhancer and possibly separation from other regulatory elements by the chromosomal inversion.

Indexed as

Chromosome InversionSequence DeletionAbnormalities, MultipleAdolescentAdultAnimalsBase SequenceChildChild, PreschoolChromosomes, Human, Pair 7Craniofacial AbnormalitiesEmbryo, MammalianEnhancer Elements, GeneticFamily HealthFemaleGene Transfer TechniquesDLX5 protein, humanDLX6 protein, humanHomeodomain ProteinsTranscription Factors

Identifiers

PMID19707792
PMCPMC2847447
OpenAlexW2032695182

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.