Evidence map›Paper›PMID 19706555›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2009

Phytochromes are the sole photoreceptors for perceiving red/far-red light in rice.

Makoto Takano, Noritoshi Inagaki, Xianzhi Xie, Seiichiro Kiyota, Akiko Baba-Kasai, Takanari Tanabata, Tomoko Shinomura

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers.

0numbers the graph read from it
0cells of the map it votes in
61citing papers in PubMed
14.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

61 citing papers in PubMed, 152 citations in OpenAlex.

  1. Red Light Triggers Lesion Formation in thePlants (Basel, Switzerland) · 2026
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  9. Adaptation to high latitudes through a novel allele of Hd3a strongly promoting heading date in rice.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023
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1 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Makoto TakanoDepartment of Plant Sciences, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan. mtakano@affrc.go.jp
Noritoshi Inagaki
Xianzhi Xie
Seiichiro Kiyota
Akiko Baba-Kasai
Takanari Tanabata
Tomoko Shinomura
Institute of Agrobiological Sciences · JPHitachi (Japan) · JP

Funding

NCIRD CDC HHS H23 IP001006
6 · The paper itself

Abstract

Phytochromes are believed to be solely responsible for red and far-red light perception, but this has never been definitively tested. To directly address this hypothesis, a phytochrome triple mutant (phyAphyBphyC) was generated in rice (Oryza sativa L. cv. Nipponbare) and its responses to red and far-red light were monitored. Since rice only has three phytochrome genes (PHYA, PHYB and PHYC), this mutant is completely lacking any phytochrome. Rice seedlings grown in the dark develop long coleoptiles while undergoing regular circumnutation. The phytochrome triple mutants also show this characteristic skotomorphogenesis, even under continuous red or far-red light. The morphology of the triple mutant seedlings grown under red or far-red light appears completely the same as etiolated seedlings, and they show no expression of the light-induced genes. This is direct evidence demonstrating that phytochromes are the sole photoreceptors for perceiving red and far-red light, at least during rice seedling establishment. Furthermore, the shape of the triple mutant plants was dramatically altered. Most remarkably, triple mutants extend their internodes even during the vegetative growth stage, which is a time during which wild-type rice plants never elongate their internodes. The triple mutants also flowered very early under long day conditions and set very few seeds due to incomplete male sterility. These data indicate that phytochromes play an important role in maximizing photosynthetic abilities during the vegetative growth stage in rice.

Indexed as

LightCluster AnalysisCotyledonFlowersGene Expression ProfilingGene Expression Regulation, DevelopmentalGene Expression Regulation, PlantMutationOligonucleotide Array Sequence AnalysisOryzaPhenotypePhotoreceptors, PlantPhytochromePhytochrome APhytochrome BPlant InfertilityPhotoreceptors, PlantPhytochromePhytochrome APhytochrome B

Identifiers

PMID19706555
PMCPMC2732857
OpenAlexW2022082589

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.