Evidence map›Paper›PMID 19704801›Full record

ArticlePlant signaling & behavior2007

Role of Peroxisomal beta-Oxidation in the Production of Plant Signaling Compounds.

Abraham Jk Koo, Gregg A Howe

Open access · bronzeAbstract read
In one paragraph

Article in Plant signaling & behavior, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.4field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Peroxisomal acyl-CoA synthetases.Biochimica et biophysica acta · 2012
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Abraham Jk KooDepartment of Energy-Plant Research Laboratory; Michigan State University; East Lansing, Michigan USA.
Gregg A Howe
Michigan State University · US

Funding

REGULATION OF DEFENSE SIGNALING IN TOMATOR01GM057795 · NIGMS · MICHIGAN STATE UNIVERSITY · PI HOWE, GREGG A · 1998 to 2012
$3.2M
NIGMS NIH HHS R01 GM057795
6 · The paper itself

Abstract

The lipid-derived signaling compound jasmonic acid (JA) regulates a wide variety of developmental and defense-related processes in higher plants. JA synthesis is initiated in the plastid and completed in peroxisomes. The peroxisomal reactions involve reduction of 12-oxo-phytodienoic acid (OPDA) to 3-oxo-2-(2'-pentenyl)-cyclopentane-1-octanoic acid (OPC-8:0), which is subsequently converted to JA by three rounds of beta-oxidation. It is widely assumed that JA precursors are activated to their CoA derivatives prior to entering the beta-oxidation cycle. However, acyl-activating enzymes (AAEs) that catalyze this reaction in vivo have remained elusive, owing in part to the large size and functional redundancy of the AAE gene family. In a recent issue of The Journal of Biological Chemistry, we reported the use of coexpression analysis to identify an AAE gene that is coordinately regulated with known JA biosynthetic components in Arabidopsis. A combination of genetic, biochemical, and cellular approaches was used to demonstrate that this gene, called OPC-8:0 CoA Ligase1 (OPCL1), has a physiological role in activating JA precursors in the peroxisome. Similar approaches may be useful for identifying additional components of the jasmonate pathway, as well as AAEs that participate in the synthesis of other plant signaling compounds.

Indexed as

4-coumarate CoA:ligaseacyl-CoA synthetaseco-expression analysisjasmonic acidOPDAperoxisomeβ-oxidation

Identifiers

PMID19704801
PMCPMC2633891
OpenAlexW2084593661

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.