Evidence map›Paper›PMID 19704751›Full record

ArticlePlant signaling & behavior2007

Sensing of Elevating CO(2) in a Marine Diatom: Molecular Mechanisms and Implications.

Yusuke Matsuda, Hisashi Harada, Kensuke Nakajima, Brian Colman

Open access · bronzeAbstract read
In one paragraph

Article in Plant signaling & behavior, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.2field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 4 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Yusuke MatsudaDepartment of Bioscience; Kwansei-Gakuin University; Hyogo, Japan.
Hisashi Harada
Kensuke Nakajima
Brian Colman
Kwansei Gakuin University · JPYork University · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

One of the critical parts of the CO(2) perception mechanisms in algae has now been identified in a marine diatom, an important finding since diatoms are the major primary producer in the ocean. Increasing CO(2) might probably be sensed directly by the cAMP forming enzyme, adenylyl cyclase, and cytosolic cAMP represses expression of CCM components in marine diatoms. Upstream sequences of CO(2)-responsive genes, ptca1 and 2, for carbonic anhydrases (CA) in the marine diatom Phaeodactylum tricornutum, were recently isolated and characterized. Promoters for both ptca1 and 2 possess at least 5 CREs respectively at -10 to -330 and at -330 to -630 relative to each transcription-start site. Our recent experiments clearly showed that one of CREs, located at -70 to -63 of the ptca1 promoter, exhibited a primary role in repressing the ptca1 promoter under high CO(2) or in the dark. Truncations of CREs in the ptca2 promoter also resulted in derepressions of the ptca2 gene in high CO(2). This addendum will discuss the implication of acquiring repression systems for the CCM and the possible impact of the repression of the CCM following a direct perception of elevated [CO(2)] in the marine environment.

Indexed as

cAMPcAMP-response elementcarbon dioxidecarbonic anhydrasemarine diatompromoter

Identifiers

PMID19704751
PMCPMC2633910
OpenAlexW1615562275

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.