ArticleMolecular biology reports2010
Analysis of Brassica rapa ESTs: gene discovery and expression patterns of AP2/ERF family genes.
Article in Molecular biology reports, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.
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18 citing papers in PubMed, 41 citations in OpenAlex.
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- In silico mining and functional analysis of AP2/ERF gene in Withania somnifera.Scientific reports · 2020Article
- Transcriptome-Wide Identification, Classification, and Characterization ofFrontiers in plant science · 2017Article
- Sequencing and comparative genomics analysis inBiotechnology, biotechnological equipment · 2014Article
- Article
- Genome-wide analysis of the AP2/ERF transcription factor superfamily in Chinese cabbage (Brassica rapa ssp. pekinensis).BMC genomics · 2013Article
- The putative phytocyanin genes in Chinese cabbage (Brassica rapa L.): genome-wide identification, classification and expression analysis.Molecular genetics and genomics : MGG · 2013Article
- Article
- Genome-wide identification, classification and expression analysis of genes encoding putative fasciclin-like arabinogalactan proteins in Chinese cabbage (Brassica rapa L.).Molecular biology reports · 2012Article
- Nucleotide diversity patterns at the drought-related DREB2 encoding genes in wild and cultivated common bean (Phaseolus vulgaris L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2012Article
- Gene expression profiles of two intraspecific Larix lines and their reciprocal hybrids.Molecular biology reports · 2012Article
- Isolation and characterization of an AP2/ERF-RAV transcription factor BnaRAV-1-HY15 in Brassica napus L. HuYou15.Molecular biology reports · 2011Article
- CkDREB gene in Caragana korshinskii is involved in the regulation of stress response to multiple abiotic stresses as an AP2/EREBP transcription factor.Molecular biology reports · 2011Article
- Isolation and characterization of a novel BcMF14 gene from Brassica campestris ssp. chinensis.Molecular biology reports · 2011Article
- Construction of cDNA library and preliminary analysis of expressed sequence tags from green microalga Ankistrodesmus convolutus Corda.Molecular biology reports · 2011Article
- Isolation and characterization of gene encoding G protein α subunit protein responsive to plant hormones and abiotic stresses in Brassica napus.Molecular biology reports · 2010Article
- Expressed sequence tags-based identification of genes in a biocontrol strain Trichoderma asperellum.Molecular biology reports · 2010Article
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Authors and funding
12 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Chinese cabbage (Brassica rapa subsp. pekinensis) is among the most important vegetables and is widely cultivated in world. Genes in the AP2/ERF family encode transcriptional regulators that serve a variety of functions in the plants. Expressed sequence tags (ESTs) are created by partially sequencing randomly isolated gene transcripts and have proved valuable in molecular biology. Starting from the database with 142 947 ESTs of B. rapa, 62 putative AP2/ERF family genes were identified by in silico cloning using the conserved AP2/ERF domain amino acid sequence of Arabidopsis thaliana as a probe. Based on the number of AP2/ERF domains and functions of the genes, the AP2/ERF transcription factors from B. rapa were classified into four subfamilies (DREB, ERF, AP2 and RAV). Using large-scale available EST information as a source of expression data for digital expression profiling, differentially detected genes were identified among diverse plant tissues. Roots contained the largest number of transcripts of the AP2/ERF family genes, followed by leaves and seeds. Only a few of the 62 AP2/ERF family genes were detected in all tissues: most were detected only in some tissues but not in others. The maximum detected was that of BraERF-B2-5, and it was recorded from seed tissue.
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