Evidence map›Paper›PMID 19700759›Full record

ArticleThe American journal of pathology2009

Relationships between deficits in tissue mass and transcriptional programs after partial hepatectomy in mice.

Jiangning Li, Jean S Campbell, Claudia Mitchell, Ryan S McMahan, Xuesong Yu, Kimberly J Riehle, Roger E Bumgarner, Nelson Fausto

Open access · bronzeAbstract read
In one paragraph

Article in The American journal of pathology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Article
  3. Ductular reactions in the liver regeneration process with local inflammation after physical partial hepatectomy.Laboratory investigation; a journal of technical methods and pathology · 2016
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. New concepts in liver regeneration.Journal of gastroenterology and hepatology · 2011
    Article
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Jiangning LiDepartment of Pathology, School of Medicine, University of Washington, Seattle, WA 98195, USA.
Jean S Campbell
Claudia Mitchell
Ryan S McMahan
Xuesong Yu
Kimberly J Riehle
Roger E Bumgarner
Nelson Fausto
University of Washington · US

Funding

Environmetal Pathology/Toxicology Training ProgramT32ES007032 · NIEHS · UNIVERSITY OF WASHINGTON · PI FAUSTMAN, ELAINE M, ROSENFELD, MICHAEL E · 1985 to 2023
$10.7M
Mechanisms for viral evasion of innate immune responseP01AI052106 · NIAID · UNIVERSITY OF WASHINGTON · PI PALESE, PETER · 2002 to 2006
$3.4M
GENE EXPRESSION IN REGENERATING AND NEOPLASTIC LIVERSR37CA023226 · NCI · UNIVERSITY OF WASHINGTON · PI FAUSTO, NELSON · 2001 to 2009
$3.1M
Pathogenesis of Hepatocellular CarcinomasR01CA074131 · NCI · UNIVERSITY OF WASHINGTON · PI FAUSTO, NELSON · 1997 to 2010
$3.1M
Mechanisms of PDGF-C Induced Hepatocellular CarcinogenesisR01CA127228 · NCI · UNIVERSITY OF WASHINGTON · PI CAMPBELL, JEAN S · 2007 to 2011
$1.5M
GENE EXPRESSION IN REGENERATING AND NEOPLASTIC LIVERSR01CA023226 · NCI · UNIVERSITY OF WASHINGTON · PI FAUSTO, NELSON · 1985 to 2000
$359k
NCI NIH HHS CA-127228NCI NIH HHS CA-23226NCI NIH HHS CA-74131NCI NIH HHS R01 CA023226NCI NIH HHS R01 CA074131NCI NIH HHS R01 CA127228NCI NIH HHS R37 CA023226NCRR NIH HHS 1S10 RR 01942NIAID NIH HHS 5P01 AI 052106NIAID NIH HHS P01 AI052106NIEHS NIH HHS 2T32 ES 007032NIEHS NIH HHS T32 ES007032
6 · The paper itself

Abstract

Liver regeneration after two-thirds partial hepatectomy (2/3 PH) results in synchronized proliferation of hepatocytes and rapid restoration of liver mass. Understanding the mechanisms that regulate this process has both biological and clinical importance. Using cDNA microarray analysis, we investigated whether gene activation after 2/3 PH is specifically related to liver growth and hepatocyte proliferation. We generated gene expression profiles at 4, 12, 20, and 30 hours after 2/3 PH and compared them with profiles obtained at the same time points after 1/3 PH, a procedure that causes minimal DNA replication. Surprisingly, a significant number of genes whose expression is altered after 2/3 PH are similarly up- or down-regulated after 1/3 PH, particularly at 4 hours. We identified a number of genes and transcription factors that are more highly expressed ("preferential expression") after 2/3 PH and show that a shift in transcriptional programs in the regenerating liver occurs between 4 and 12 hours after 2/3 PH, a time at which the decision to replicate appears to be made. These results show that the liver responds to PH with massive changes of gene expression, even in the absence of DNA replication. We suggest that the changes in gene expression during the first 4 to 6 hours after 2/3 PH may induce chromatin remodeling and facilitate the binding of new sets of transcription factors required for DNA replication.

Indexed as

Gene Expression RegulationAnimalsCell CountCell ProliferationChromatin Assembly and DisassemblyDNA ReplicationGene Expression ProfilingHepatectomyLiverLiver RegenerationMaleMiceMice, Inbred C57BLOligonucleotide Array Sequence AnalysisTime FactorsTranscription, Genetic

Identifiers

PMID19700759
PMCPMC2731115
OpenAlexW2153466153

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.