Evidence map›Paper›PMID 19698791›Full record

ArticleJournal of structural biology2009

Methods for identifying and averaging variable molecular conformations in tomograms of actively contracting insect flight muscle.

Shenping Wu, Jun Liu, Mary C Reedy, Hanspeter Winkler, Michael K Reedy, Kenneth A Taylor

Abstract read
In one paragraph

Article in Journal of structural biology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Marker-free dual-axis tilt series alignment.Journal of structural biology · 2013
    Article
  6. Article
  7. Electron tomography of paracrystalline 2D arrays.Methods in molecular biology (Clifton, N.J.) · 2013
    Article
  8. Article
  9. Article
  10. Direct visualization of myosin-binding protein C bridging myosin and actin filaments in intact muscle.Proceedings of the National Academy of Sciences of the United States of America · 2011
    Article
  11. Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Shenping WuInstitute of Molecular Biophysics, Florida State University, Tallahassee, FL 32306-4380, USA.
Jun Liu
Mary C Reedy
Hanspeter Winkler
Michael K Reedy
Kenneth A Taylor

Funding

Myofibrillar Structure of Striated MuscleR37AR014317 · NIAMS · DUKE UNIVERSITY · PI REEDY, MICHAEL KAY · 2001 to 2010
$5.0M
EM STUDIES ON MUSCLER01GM030598 · NIGMS · FLORIDA STATE UNIVERSITY · PI TAYLOR, KENNETH ALLEN · 1985 to 2020
$4.9M
MYOFIBRILLAR STRUCTURE OF STRIATED MUSCLER01AR014317 · NIAMS · DUKE UNIVERSITY · PI EDWARDS, ROBERT JON · 1986 to 2016
$2.1M
Computational methods for molecular tomographyR01GM082948 · NIGMS · FLORIDA STATE UNIVERSITY · PI WINKLER, HANSPETER · 2007 to 2011
$1.3M
NIAMS NIH HHS AR14317NIAMS NIH HHS R01 AR014317NIAMS NIH HHS R37 AR014317NIGMS NIH HHS GM30598NIGMS NIH HHS R01 GM030598NIGMS NIH HHS R01 GM082948
6 · The paper itself

Abstract

During active muscle contraction, tension is generated through many simultaneous, independent interactions between the molecular motor myosin and the actin filaments. The ensemble of myosin motors displays heterogeneous conformations reflecting different mechanochemical steps of the ATPase pathway. We used electron tomography of actively contracting insect flight muscle fast-frozen, freeze substituted, Araldite embedded, thin-sectioned and stained, to obtain 3D snapshots of the multiplicity of actin-attached myosin structures. We describe procedures for alignment of the repeating lattice of sub-volumes (38.7 nm cross-bridge repeats bounded by troponin) and multivariate data analysis to identify self-similar repeats for computing class averages. Improvements in alignment and classification of repeat sub-volumes reveals (for the first time in active muscle images) the helix of actin subunits in the thin filament and the troponin density with sufficient clarity that a quasiatomic model of the thin filament can be built into the class averages independent of the myosin cross-bridges. We show how quasiatomic model building can identify both strong and weak myosin attachments to actin. We evaluate the accuracy of image classification to enumerate the different types of actin-myosin attachments.

Indexed as

AnimalsElectron Microscope TomographyInsectaMuscle ContractionMuscles

Identifiers

PMID19698791
PMCPMC2805068

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.