Evidence map›Paper›PMID 19698131›Full record

ArticleBMC plant biology2009

Identification of candidate genome regions controlling disease resistance in Arachis.

Soraya C M Leal-Bertioli, Ana Carolina V F José, Dione M T Alves-Freitas, Márcio C Moretzsohn, Patrícia M Guimarães, Stephan Nielen, Bruna S Vidigal, Rinaldo W Pereira, Jodie Pike, Alessandra P Fávero and 3 more

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
12.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 143 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. LDRGDb - Legumes disease resistance genes database.Frontiers in plant science · 2023
    Article
  10. Article
  11. Article
  12. Article
  13. Genetics, genomics and breeding of groundnut (Plant breeding = Zeitschrift fur Pflanzenzuchtung · 2019
    Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Mapping Late Leaf Spot Resistance in Peanut (Frontiers in plant science · 2018
    Article
  19. Article
  20. Potential Uses of Wild Germplasms of Grain Legumes for Crop Improvement.International journal of molecular sciences · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 4 countries.

Soraya C M Leal-BertioliEmbrapa Genetic Resources and Biotechnology, C.P. 02372, CEP 70.770-900, Brasília, DF, Brazil. soraya@cenargen.embrapa.br
Ana Carolina V F José
Dione M T Alves-Freitas
Márcio C Moretzsohn
Patrícia M Guimarães
Stephan Nielen
Bruna S Vidigal
Rinaldo W Pereira
Jodie Pike
Alessandra P Fávero
Martin Parniske
Rajeev K Varshney
David J Bertioli
Brazilian Agricultural Research Corporation · BRUniversidade Católica de Brasília · BRSainsbury Laboratory · GBInternational Crops Research Institute for the Semi-Arid Tropics · INUniversidade de Brasília · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundWorldwide, diseases are important reducers of peanut (Arachis hypogaea) yield. Sources of resistance against many diseases are available in cultivated peanut genotypes, although often not in farmer preferred varieties. Wild species generally harbor greater levels of resistance and even apparent immunity, although the linkage of agronomically un-adapted wild alleles with wild disease resistance genes is inevitable. Marker-assisted selection has the potential to facilitate the combination of both cultivated and wild resistance loci with agronomically adapted alleles. However, in peanut there is an almost complete lack of knowledge of the regions of the Arachis genome that control disease resistance.

resultsIn this work we identified candidate genome regions that control disease resistance. For this we placed candidate disease resistance genes and QTLs against late leaf spot disease on the genetic map of the A-genome of Arachis, which is based on microsatellite markers and legume anchor markers. These marker types are transferable within the genus Arachis and to other legumes respectively, enabling this map to be aligned to other Arachis maps and to maps of other legume crops including those with sequenced genomes. In total, 34 sequence-confirmed candidate disease resistance genes and five QTLs were mapped.

conclusionCandidate genes and QTLs were distributed on all linkage groups except for the smallest, but the distribution was not even. Groupings of candidate genes and QTLs for late leaf spot resistance were apparent on the upper region of linkage group 4 and the lower region of linkage group 2, indicating that these regions are likely to control disease resistance.

Indexed as

Chromosome MappingGenome, PlantQuantitative Trait LociAmplified Fragment Length Polymorphism AnalysisArachisDNA, PlantGenes, PlantGenetic LinkageGenetic MarkersImmunity, InnateMicrosatellite RepeatsPolymorphism, Single NucleotideSequence Analysis, DNASyntenyDNA, PlantGenetic Markers

Identifiers

PMID19698131
PMCPMC2739205
OpenAlexW2100591927

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.