Evidence map›Paper›PMID 19697117›Full record

ArticleVirus genes2009

Characterization of a monothiol glutaredoxin encoded by Chlorella virus PBCV-1.

Lisa A Fitzgerald, Yuanzheng Zhang, Gentry Lewis, James L Van Etten

Open access · bronzeAbstract read
In one paragraph

Article in Virus genes, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.6field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Lisa A FitzgeraldDepartment of Plant Pathology, University of Nebraska, Lincoln, NE 68583, USA.
Yuanzheng Zhang
Gentry Lewis
James L Van Etten
University of Nebraska–Lincoln · USUnited States Navy

Funding

VIRAL SHUTOFF OF HOST TRANSCRIPTION--PBCV-1 INFECTEDP20RR015635 · NCRR · UNIVERSITY OF NEBRASKA LINCOLN · PI WOOD, CHARLES · 2000 to 2009
$22.1M
GENOME AND GENETICS OF A EUKARYOTIC ALGAL VIRUSR01GM032441 · NIGMS · UNIVERSITY OF NEBRASKA LINCOLN · PI VAN ETTEN, JAMES L · 1985 to 2009
$2.8M
Research Training in Comparative Viral PathogenesisT32AI060547 · NIAID · UNIVERSITY OF NEBRASKA LINCOLN · PI WOOD, CHARLES · 2004 to 2013
$2.5M
NCRR NIH HHS P20 RR015635NCRR NIH HHS P20RR15635NIAID NIH HHS 1 T32 AI060547NIAID NIH HHS T32 AI060547NIGMS NIH HHS GM32441NIGMS NIH HHS R01 GM032441
6 · The paper itself

Abstract

Annotation of the 330-kb Chlorella virus PBCV-1 genome identified a 237 nucleotide gene (a438l) that codes for a protein with approximately 35% amino acid identity to glutaredoxins (Grx) found in other organisms. The PBCV-1 protein resembles classical Grxs in both size (9 kDa) and location of the active site (N-terminus). However, the PBCV-1 Grx is unusual because it contains a monothiol active site (CPYS) rather than the typical dithiol active site (CPYC). To examine this unique active site, four site-specific mutants (CPYC, CPYA, SPYC, and SPYS) were constructed to determine if the N-terminal cysteine is necessary for enzyme activity. Wild type and both mutants containing N-terminal cysteines catalyzed the reduction of disulfides in a coupled system with GSH, NADPH, and glutathione reductase. However, both mutants with an altered N-terminal cysteine were inactive. The grx gene is common in the Chlorella viruses. Molecular phylogenetic analyses of the PBCV-1 enzyme support its relatedness to those from other Chlorella viruses and yet demonstrate the divergence of the Grx molecule.

Indexed as

Amino Acid MotifsAmino Acid SequenceCatalytic DomainChlorellaGlutaredoxinsMolecular Sequence DataMolecular WeightMutagenesis, Site-DirectedPhycodnaviridaePhylogenySequence Homology, Amino AcidViral ProteinsGlutaredoxinsViral Proteins

Identifiers

PMID19697117
PMCPMC2898178
OpenAlexW2071924019

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.