Evidence map›Paper›PMID 19696147›Full record

ArticleGenes & development2009

A role for microRNAs in the Drosophila circadian clock.

Sebastian Kadener, Jerome S Menet, Ken Sugino, Michael D Horwich, Uri Weissbein, Pipat Nawathean, Vasia V Vagin, Phillip D Zamore, Sacha B Nelson, Michael Rosbash

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 105 papers.

0numbers the graph read from it
0cells of the map it votes in
105citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

105 citing papers in PubMed, 203 citations in OpenAlex.

  1. Article
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  10. Regulation of insect behavior by non-coding RNAs.Science China. Life sciences · 2024
    Review
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Photoperiod-Dependent Expression of MicroRNA inInternational journal of molecular sciences · 2022
    Article
  19. Article
  20. Article

45 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Sebastian KadenerNational Center for Behavioral Genomics and Department of Biology, Brandeis University, Waltham, Massachusetts 02454, USA.
Jerome S Menet
Ken Sugino
Michael D Horwich
Uri Weissbein
Pipat Nawathean
Vasia V Vagin
Phillip D Zamore
Sacha B Nelson
Michael Rosbash
Brandeis University · USUniversity of Massachusetts Chan Medical School · USHoward Hughes Medical Institute · USNational Library of Israel · IL

Funding

THE MOLECULAR GENETIC BASIS OF SENSORY BEHAVIOR IN DROSOPHILAP01NS044232 · NINDS · BRANDEIS UNIVERSITY · PI GARRITY, PAUL · 2002 to 2011
$13.2M
Mouse CoreP30NS045713 · NINDS · BRANDEIS UNIVERSITY · PI ROSBASH, MICHAEL · 2003 to 2013
$7.8M
Understanding the Mechanism of RNA InterferenceR37GM062862 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI ZAMORE, PHILLIP D · 2010 to 2019
$5.3M
Understanding microRNA Biogenesis and FunctionR01GM065236 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI ZAMORE, PHILLIP D · 2003 to 2014
$5.0M
Spike-timing Dependent PlasticityR01MH066338 · NIMH · BRANDEIS UNIVERSITY · PI NELSON, SACHA B · 2002 to 2011
$3.3M
Understanding the Mechanism of RNA Interference (RNAi)R01GM062862 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI ZAMORE, PHILLIP D · 2001 to 2009
$3.2M
ORGANIZATION OF YEAST RIBOSOMAL PROTEIN GENESR01GM023549 · NIGMS · BRANDEIS UNIVERSITY · PI ROSBASH, MICHAEL · 1985 to 2009
$2.9M
NIGMS NIH HHS GM23549NIGMS NIH HHS GM62862NIGMS NIH HHS GM65236NIGMS NIH HHS R01 GM023549NIGMS NIH HHS R01 GM062862NIGMS NIH HHS R01 GM065236NIGMS NIH HHS R37 GM062862NIMH NIH HHS R01 MH066338NINDS NIH HHS P01 NS044232NINDS NIH HHS P01-NS44232NINDS NIH HHS P30 NS045713NINDS NIH HHS P30-NS45713PHS HHS F30A6030283
6 · The paper itself

Abstract

Little is known about the contribution of translational control to circadian rhythms. To address this issue and in particular translational control by microRNAs (miRNAs), we knocked down the miRNA biogenesis pathway in Drosophila circadian tissues. In combination with an increase in circadian-mediated transcription, this severely affected Drosophila behavioral rhythms, indicating that miRNAs function in circadian timekeeping. To identify miRNA-mRNA pairs important for this regulation, immunoprecipitation of AGO1 followed by microarray analysis identified mRNAs under miRNA-mediated control. They included three core clock mRNAs-clock (clk), vrille (vri), and clockworkorange (cwo). To identify miRNAs involved in circadian timekeeping, we exploited circadian cell-specific inhibition of the miRNA biogenesis pathway followed by tiling array analysis. This approach identified miRNAs expressed in fly head circadian tissue. Behavioral and molecular experiments show that one of these miRNAs, the developmental regulator bantam, has a role in the core circadian pacemaker. S2 cell biochemical experiments indicate that bantam regulates the translation of clk through an association with three target sites located within the clk 3' untranslated region (UTR). Moreover, clk transgenes harboring mutated bantam sites in their 3' UTRs rescue rhythms of clk mutant flies much less well than wild-type CLK transgenes.

Indexed as

Gene Expression Regulation3' Untranslated RegionsAnimalsBehavior, AnimalBinding SitesCell LineCircadian RhythmCLOCK ProteinsDrosophila melanogasterDrosophila ProteinsEvolution, MolecularGene ExpressionHeadMaleMicroRNAsRNA-Induced Silencing Complex3' Untranslated Regionsbantam microRNA, DrosophilaClk protein, DrosophilaCLOCK ProteinsDrosophila ProteinsMicroRNAsRNA-Induced Silencing ComplexRNA, MessengerTranscription Factors

Identifiers

PMID19696147
PMCPMC2751990
OpenAlexW2159850907

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.